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November 19, 2008

Feature - People behind the grid: Simon Lin Simon Lin at the Academia Sinica Grid Computing Center. Image courtesy of Kevin Wang (Editor's note: Simon C. Lin is currently coordinator of the Asia Federation in EGEE and is responsible for the ASGC—Academia Sinica Grid Computing Center—the only WLCG Tier-1 Center in Asia. He is deputy project manager of the EUAsiaGrid project, coordinated by ASGC and INFN in Italy.)iSGTW: How did you get involved in particle physics? I am a theoretical physicist by training. Like many of my generation, I was inspired by the great names in physics of the first half of the 20th century. I was fortunate enough to do my Ph.D. at Edinburgh University under Peter Higgs. Firstly, I worked on applying group theory to supersymmetry but then turned to field theory on surfaces and interfaces later. I still feel theoretical particle physics is excellent training for physicists, independent of what they go on to do.iSGTW: How did you get involved in computing?In Edinburgh, I had Dave Wallace as

November 19, 2008

Link of the week - Straight from the horse’s mouth: GridCast from Austin Image courtesy of David Wallom An exhibitor’s eye view “My posts on this blog will try to give an exhibitor’s eye view of the conference, so I have my camera with me and will keep my Flickr updated with pictures from the floor (tagged Supercomputing08) ... I'll also be twittering and using the the #SC08 tag so keep an eye on that too for musings from me and others,” blogs GridTalk's Neasan O'Neill, of  GridPP and EGEE.To bring you more perspectives are David Wallom, technical manager of the Oxford e-Research Centre and technical director of the UK National Grid Service. Claire Devereux who manages the UK & Ireland regional consortium in the EGEE and NGS projects and is also involved in grid computing outreach and dissemination activities.Tim Rupp who works with the Computer Security Team at Fermilab in Batavia, Illinois where he spends most of his time on the technical implementation of the lab’s

November 12, 2008

Editorial - iSGTW and the future Simulation of neutron star.  Image courtesy of AEI / Seidenfadenf This week marks the 100th issue of International Science Grid This Week. We have come a long way since our first issue: this publication now has over 4,000 subscribers, 50,000 visits per month,  and a Google page ranking of 8 on a scale of 10. (By way of comparison, Google itself has a 10, and Sony corporation has a 7.) From the very first issue, iSGTW has sought to share stories of grid-empowered science and scientific discoveries, by acting as an impartial reporter of science grids.As time has gone on, this publication has moved from exclusively featuring American grid-enabled science achievements—in the beginning, Open Science Grid started this publication as Science Grid This Week, as a newsletter covering U.S. grid projects—to more of a worldwide emphasis. This expansion was reflected by the addition of the word International to the title and by co-sponsorship with Enabling Grids for E-SciencE (EGE

November 12, 2008

Feature - Where are they now? Interconnected computers for high performance operations call for strong interoperability. Image courtesy of cordis.europa.eu Updates from the three projects covered in iSGTW’s inaugural issue, 16 November 2006.Building the global gridISGTW led its first issue with a feature on the possibility of and progress toward achieving one seamless global grid.  At the time of writing, basic interoperation between Open Science Grid and Enabling Grids for E-sciencE had been achieved, according to Laurence Field of EGEE. “Scientists using either infrastructure can now submit jobs to both and copy data between the infrastructures,” Field said. “And if another grid interoperates with either, they’ll see the other grid’s resources. Through activities like these we hope to build up a homogenous grid landscape.”Where are they now?Morris Riedel of the Jülich Supercomputing Centre in Germany, and chair of the Grid Interoperation Now (GIN) group within the Open Grid F

November 5, 2008

Announcement - Call for session proposals for joint program: EGEE, OGF and OGF-Europe Dieter Kranzlmueller, EGI Strategic Director speaking at OGF23 (Barcelona, Spain, June 2008). The EGEE User Forum/OGF25 & OGF-Europe’s 2nd International Event builds on a series of highly successful events in Europe, such as OGF20/EGEE User Forum (Manchester, UK, May 2007) and OGF23 which together helped connect over 1500 people from all over the world. Image courtesy of Sergio Andreozzi, INFN  Event: EGEE User Forum /OGF25 & OGF-Europe’s 2nd International EventDate: 2-6 March 2009Venue: Le Ciminiere, Catania, Sicily, ItalySubmission: http://www.gridforum.org/OGF25/cfp.phpSubmission deadline: 15 December 2008Notification: 15 January 2009See Call for abstracts: the 4th EGEE user forum for more information about the event.Session proposals are open for but not limited to:Digital Libraries and Cultural HeritageDigital Media and Digital RepositoriesCollaborative Working EnvironmentsFuture Emerging TechnologiesGreen ITGrids &

November 5, 2008

Feature - Geocluster open for business Two-dimensional images can be hard to interpret.Image courtesy of CGGVeritas Last summer, CGGVeritas (Compagnie Générale de Géophysique-Veritas), the first business to develop an industrial application with Enabling Grids for E-sciencE, opened its doors to clients. “Everything is set for our sales team,” says Gaël Youinou, software manager at CGGVeritas. “I expect that the first contracts with clients will be signed before the end of the year.” The company developed software that processes seismic data, which comes from a variety of sources, including trucks that mechanically send sound-waves into the earth with the use of large, hydraulics devices, and ship-borne “airguns” that fire at regular intervals just below the water’s surface as the vessel moves along pre-determined survey lines. Regardless of the source of the sound-waves, or whether they take place on land or sea, the principle is the same: The reflected compression

November 5, 2008

Link of the week - We'll always have Paris: ESFRI meets grid Research Infrastructures are at the core of the knowledge triangle. From Hervé Pero′s presentation Utilizing the full potential of research infrastructures for strengthening the European Research Area (ERA). Image courtesy of H Pero Less intimate than Ilsa and Rick, close to 100 participants attended a Reflection Group (e-IRG) workshop in Paris on 21-22 October to discuss management of massive data sets, access for users to these data sets, and access to computing resources. Projects from ESFRI, the European strategy forum on research infrastructures, representing many scientific disciplines, are important potential grid users. This was the first event where the ESFRI and cyberinfrastructure (CI) worlds came together.  ESFRI, formed in 2002 at the behest of the European Council, works to strengthen the scientific integration of Europe and its international outreach.  ESFRI facilitates policy-making on research infrastructures, the faciliti

October 29, 2008

  Image of the week - Medical Data Manager Doctors in Amsterdam may soon have more time in their busy schedules to spend with their patients.A new way to access and manage patient data—the EGEE-developed Medical Data Manager, or MDM—was installed in June at the Amsterdam Medical Center, Netherlands, in its first deployment for real use. They hope to finish testing by the end of this year, and use the tool in production in 2009. In development since 2003, the MDM allows secure access to images in the DICOM format from grid resources. Standing for Digital Image and COmmunication in Medicine, DICOM is the prevailing world standard for computerized tomography (CT) scans, magnetic resonance images (MRI), positron-emission tomography (PET), X-rays and ultrasound images. MDM has several layers of access to comply with strict privacy requirements.“This tool is expected to be a great boon for the doctors and researchers, ” said Johan Montagnat, computing researcher at CNRS. “They c

October 29, 2008

Feature - People behind the grid: Erwin Laure

Image courtesy of Erwin Laure

Erwin Laure was technical director for Enabling Grids in E-sciencE (EGEE), and worked for CERN for the past six-and-a-half years. ISGTW caught up with him during his last full week at EGEE, before he was to take up a position in Stockholm at the Royal Institute of Technology, known by its Swedish acronym “KTH.” iSGTW: If you had to describe what you do at EGEE in two or three sentences, what would you say?
EL: I help keep the project’s technical end running, on a short- to medium- term basis. I make sure that we meet the requirements of users, so far as middleware, infrastructure, training and coordination of our 100-plus partners goes.iSGTW: How did you come to EGEE?EL: Just as I was finishing up my PhD in high-performance computing and business administration at the University of Vienna in the late 1990s, this thing came along called the “grid.” It sounded interesting, and I

October 22, 2008

Announcement -Call for abstracts: the 4th EGEE user forum Image courtesy of EGEE  EGEE-User Forum2-6 March 2009Catania, Sicily Hosted by INFNCall for abstracts (full text)Template for abstract submissionImportant dates:Abstract submission opening date: 15th of October Deadline for abstract submission: 5th of December Notification of acceptance: 15th of January  The User Forum is an annual key event of the EGEE project. The forum provides an important opportunity for members of the grid community exploiting the technologies developed by EGEE and various collaborating projects, to present their work, discuss grid technology use with colleagues, and learn about advances in middleware and application services.The 4th EGEE User Forum is co-located with OGF25 and OGF-Europe's 2nd international event. This combined event will once again strengthen the links between EGEE and the Open Grid Forum, bringing users and standards bodies together to ensure that the future of the grid is complemented by the establishment of key stand

October 22, 2008

Announcement - Launch of a call for proposals: the location of EGI.org Image courtesy of EGI  TThe EGI Design Study Policy Board invites National Grid Initiatives to place bids for the location of the new organization. Bids will be accepted until 1 December 2008.The EGI Design Study (EGI_DS) project aims at establishing a sustainable long-term grid infrastructure in Europe and at moving from the existing short term funded project structure to a sustainable service. The EGI_DS is financed by the European Commission’s 7th Framework Programme. It was launched in September 2007 and will continue until November 2009. It is planned that the EGI organization will be operational at the beginning of 2010. The launch of this Call for Proposals invites National Grid Initiatives (NGI) and NGI-approved organizations to place bids for the long-term accommodation of the EGI.org central office which will permanently host up to 50 people. The office must be located in an EU Member State or in an EU associated state, and be available by

October 8, 2008

Feature - Celebrating the development of the LHC grid Wolfgang von Rüden unveils the cermonial globe sculpture, before an audience in CERN's globe-shaped building. Image courtesy of GridFest Last Friday, 3 October, grid-enthusiasts gathered—physically and virtually—from around the world for a special event: to celebrate the success of the Worldwide Large Hadron Collider Computing Grid. “After the very successful start of the Large Hadron Collider on 10 September, it is now the turn of the Worldwide LHC Computing Grid to celebrate the transition from a development and deployment phase into operation,” said Wolfgang von Rüden, head of CERN’s Information Technology department, in his welcome address to the 250 grid enthusiasts gathered in CERN’s ‘globe’ building. “I am very happy to tell you that we are ready to handle the unprecedented flood of data that will be generated by the LHC.”In his address “CERN and LHC: their place in global science” CERN&

October 8, 2008

Feature - Istanbul roundup One highlight of EGEE ’08 was the Gala Dinner, held on the Bosphorus in a converted waterfront building next to a mosque. Rumor says that the restaurant was originally a house built for the daughter of a sultan. Image courtesy of Dan Drollette What has 545 people from 48 countries, 285 presentations, 97 sessions, 12 demonstrations, and 50 partners?The EGEE conference in Istanbul.“There was an excitement here,” said Bob Jones, EGEE project manager. “It all came together.” Highlights, said Jones, included a Best Application Presentation award given to the CYCLOPS team of Marco Verlato (INFN), Stefano Dal Pra (INFN) and Valerio Angelini (CNR-IMAA)  for their  “G-RISICO: A Wild Fire Risk Assessment application running on an advanced Grid infrastructure.”  The team said that their approach could help civil protection authorities predict not only wildfire, but the risks of many types of natural disasters.  Peter Kacsuk, director of EDGES, and Bob

October 8, 2008

Feature - Stateside celebration at the bi-continental LHC Grid Fest Upper left, Pier Oddone, director of Fermilab, opens the festivities. Upper right, from l-to-r, Miron Livny, Don Petravick of Fermilab and DOE’s OHEP, Susan Turnbull (half hidden), and Patricia McBride. Bottom, Steve Cotter at the podium, and broadcast images from CERN and other sites. Image courtesy of Reidar Hahn, Fermilab. Three weeks after the US-LHC community celebrated in the wee hours as the first beam circulated in the Large Hadron Collider across the Atlantic, staff and supporters gathered again in Fermilab’s signature high rise.  Via satellite, they co-celebrated the official start-up of the world-wide LHC Computing Grid (WLCG) with their colleagues around the U.S. and abroad.As the U.S. Tier-1 site for the CMS experiment, Fermilab has contributed significantly to the grid development for the experiment, and is an important Open Science Grid site, both in terms of resources and expertise. The same is true of Brookhaven National Lab wi

October 1, 2008

Feature - We must not be afraid of the future: EGEE to EGI Time to turn off this road and transition to the next.Image courtesy of www.gerards.be. At last week’s Enabling Grids for E-sciencE (EGEE) conference in Istanbul, the audience received a piece of sound advice during the welcome address from the European Commission, eScience grids: Where does Europe stand?, delivered by Mário Campolargo:  “We must not be afraid of the future.” Within the European Grid Initiative (EGI), planning is underway for the implementation of a sustainable, pan-European grid infrastructure to support collaborative eScience. The building blocks of this infrastructure are national grid initiatives—autonomous, national grid bodies, able to mobilize their own national funding and computing resources and to support their own research communities. The projected transition of grids from the current short-term, project-based approach to a new long-term model will require significant reorganization for the grid community; EG

October 1, 2008

Feature - People behind the LHC Grid: A Bird’s eye view When the LCG first started, the idea of a grid, with its tiered hierarchy, was still new. Image courtesy of Ian Bird  Ian Bird is project leader for the Large Hadron Collider Computing Grid, where he is responsible for grid deployment and all of the technical work involved in setting up the grid infrastructure for the LHC. iSGTW: If you were at a cocktail party, and someone asked “What do you do,” how would you answer, in lay person’s terms?IB: Well, I’d try to change the subject. (Laughs)Seriously, I try to coordinate the overall activities of the LCG—the experiments, the service providers, the money and the people. I report to CERN management and oversight, to make sure all the nuts and bolts are in the right place. And, of course, I  think about all the technical aspects.iSGTW: How do things look now?IB: Well, we’re very upbeat. Of course, we always knew that there would be surprises, but we are handling them.&nb

September 24, 2008

Image of the week - EGEE 2008 this week in Istanbul iSGTW in Istanbul. Click image for a PDF file of the poster to download.Image courtesy of Andre-Pierre OlivierIt's tough to enjoy the ambiance of an Istanbul sunset via the Internet, but thanks to GridTalk’s GridCast you're not too far removed from what's happening at EGEE 08... Take some virtual tours:Neu Grid  Grid CSICEtics 2BalticGrid IIEELA 2Belief IITR-GridHealth-e-Child Read Catherine Gater’s reports on the opening plenaries and thinking about grids in Asia.    Gillian Sinclair of the U.K.’s NGS will be “podded”, as she calls it, on Wednesday. “Yes, I'm being filmed for a podcast and I’m slightly nervous as this is my first one! Must remember not to use any odd Scottish words... ”

September 3, 2008

Announcement - EGEE 2008 Business Track Networking at the STFC/EGEE Workshop on Distributed Computing, London, May 2008. Image courtesy of EGEE  Driving Grid Adoption, Fostering IT InnovationEGEE ’08 Business Track22-23 September 2008 Istanbul, TurkeyThe EGEE ’08 Business Track is the third in a successful series of dedicated sessions designed to bring the benefits of grid and related technologies to the attention of businesses that have not yet looked at these for their innovation.The Business Track will connect grid experts, end users and IT innovators to explore new opportunities for the adoption of distributed computing by engaging with EGEE through set processes designed to promote industrial involvement and collaborative developments. “The Business Track offers a prime opportunity to learn from an expert panel of developers and users, showcase success stories and pave the ground for future collaborative developments supported by EGEE’s Business Programme”, says Bob Jones, EGEE Project Direc

September 3, 2008

Feature - Guardian angels at the ready Image courtesy of sxc.hu. Life is a complicated, tricky business and we sometimes need a little guidance. In the same way, novice grid users adding their applications to the grid—also a complicated, tricky business—often benefit from a helping hand. “We are here to be the equivalent of ‘guardian angels’ for the grid,” says Gergely Sipos, porting expert at the Hungarian Academy of Sciences in Budapest. Sipos is the team leader of a new group within the Enabling Grids for E-sciencE project. “We want to simplify a process that—in some instances—can be quite difficult.”The Application Porting Support group is designed specifically to make it easy for new or advanced users to get their applications on the grid. Experts from the porting team work closely with application owners to understand their requirements and to identify suitable approaches, tools for the porting process and to set realistic and feasible porting scenarios. The group

July 16, 2008
iSGTW Feature - GRelC at Euro-Mediterranean Centre for Climate Change

  Feature - GRelC @ Euro-Mediterranean Centre for Climate Change RealClimate is a commentary site on climate science, founded by working climate scientists—mostly from Columbia University's Lamont-Dohery Earth Observatory— written for the general public. Image courtesy of RealClimate Drowning in data Talk to any climate scientist, and they’ll tell you that one of their biggest problems is dealing with the sheer volume of data they acquire when dealing with something as complex as worldwide climate change. They don’t lack for sources of data; if anything, they have too much to choose from—everything from tree ring data to ice cores to collections of air samples from hot-air balloons. With this in mind, managing the metadata can be a bottleneck. But  distributed, peer-to-peer and grid-enabled solutions can help to provide a secure, decentralized, transparent and scalable solution for managing petabytes of datasets spread among several sites, say researchers at the EuroMediterranean Center f

July 9, 2008

  Announcement - Grid school shares resources Image courtesy of ICEAGE  Grid computing school shares teaching resources through digital library and behind-the-scenes blog  Anyone with Internet access can now share all the thrills and spills of the sixth International Summer School on Grid Computing, from 6-18 July in Hungary. The school is training approximately 40 students from 20 countries in the ways of grid computing—a technology that helps scientists tackle complex problems by combining the power of computers around the world to create a powerful, shared computing resource. In the spirit of shared resources, the school has made all of its teaching materials available to the public via the ICEAGE digital library. Further, the school has invited a team of GridCast bloggers to blog live from behind the scenes, ensuring that the excitement of the school is also shared with those learning from home.“My experience at ISSGC’07 was profoundly worthwhile and eye opening,” says past student Andrew

June 25, 2008
iSGTW - Grid computing walks the standard line

Grid computing walks the standard line: thinking inside the box With many projects involved, truly seamlesss interoperability can be a challenge.Image courtesy of NorduGrid and Vicky White“Standard” is often equated with “average” or “boring.” How can you innovate or invent when you’re bound by standards and regulations? How can you push the boundaries when you’re stuck inside a box?Yet how can you create something on a grand scale—something that can slot into place with other grand things—unless you create something interoperable. Something . . . standard.In this special feature, former iSGTW editor (and now GridTalk editor) Cristy Burne reports on this easily overlooked aspect of grid computing. Why should we care? Standardizing grids: the current landscape Challenges for the future The way forward A standard in action: GridFTP A “de facto” standard: VOMSBONUS FEATURE: What does the grid community have to say about standards? (See what people from inst

June 4, 2008
iSGTW Feature - Malaysia's grid grows in power

Feature - Malaysia’s grid grows in power The Petronas Towers at night, Kuala Lumpur, Malaysia.Image courtesy of Gregor Pogöschnik, sxc.hu (Editor’s note: We were curious about what people in other parts of the world have to say about the grid. Here’s an excerpt from Malaysia’s "Star Online.”)   Malaysia’s grid computing system, comprising several thousand CPUs at Mimos Bhd’s Technology Park Malaysia headquarters, has been successfully linked to to a European Union-supported grid called Enabling Grids for E-SciencE (EGEE).Mimos, an applied research organization, said its KnowledgeGrid Malaysia gained a substantial increase in computing power from the link-up with EGEE, which is made up of several clusters located in Germany, Britain, Austria, Turkey, the Netherlands, Italy and other nations. It will allow Malaysian researchers to collaborate more efficiently and easily with their counterparts outside the country.KnowledgeGrid went through a three-month vetting process with

May 28, 2008
iSGTW Feature - Health-e-Child: one year on

Feature - Health-e-Child Anatomical heart model, with the colored patchesrepresenting heart segments, proposed by the American Heart Association. These divisions allow models to simulate localized abnormalities in diseased hearts, such as the focal thickening of the septum and local fiber disarray in hypertrophied cardiomyopathy. Things that look like ittle hairs represent the orientation of muscle fibers. Image courtesy Health-e-Child. Last year, iSGTW reported on the initial deployment of Health-e-Child, a European project that fits grid technology to pediatric medicine. In this issue we provide an update. New portal, new applicationsHealth-e-Child uses the Gateway, a grid-based platform developed by maat Gknowledge together with other European partners, to store, retrieve and manipulate medical records. One of the most successful applications running on this platform—winning a “Best Live Demo” award from the EGEE User Forum in Clermont-Ferrand, France—is the CaseReasoner applicati

May 7, 2008

  Feature - WISDOM unplugged: malaria drug-leads graduate to the wet lab The WISDOM project screened one million molecules for their potential to bind to and inhibit “plasmepsin,” a protein essential for survival of the malaria parasite. The parasite can be transferred to a human host via the mosquito vector.Image courtesy of PD-USGOV Hot on the heels of their initial success, WISDOM collaborators have high hopes as their anti-malaria drug-leads move from computer processers to petri dishes.“We’re excited to be at this stage,” says Ana Lucia Da Costa, WISDOM researcher at CNRS, France. “I can’t wait till we get the next set of results back.”The WISDOM project, a collaboration of eight core institutions in five countries, began searching for anti-malaria drugs in 2005. Rather than go straight to the lab, the team used a grid-powered software program to screen for potential drug-leads, searching for small molecules—called ligands—that could bind to and disable the mal