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August 27, 2008
iSGTW Link of the week - Virtual reconstruction of a prairie

Link of the week - Virtual reconstitution of a prairie Image courtesy of MCS@UH Researchers at the University of Houston in the U.S. and the University of Rennes in France are collaborating on the Virtual Prairie project (ViP), to study the effects of management practices on plant competition and genetic structure of the prairie. Their work may eventually contribute to the design of prairies with high agronomical value and the preservation of ecological systems with high biodiversity.  Using BOINC, hundreds of people from around the world have contributed computer time for the 22 million simulations the team completed in July. In a letter to their “Virtual Prairie Explorers”, the joint Houston-Rennes team reports the completion of phase 1, the modeling of an individual plant. “Basically we show that for achieving the best growth, there is no single optimum in plants but rather multiple strategies,” the authors write. “This would explain why some natural prairies are composed of species of

August 20, 2008

Link of the Week - Watching the clock Image courtesy of CERNHow much time is left until the official moment when the Large Hadron Collider is turned on?When will it be?If you get confused, you can now go to a clock that counts down to the LHC startup, on one of the public pages of CERN. Of course, at this point, it is measured in days. But soon enough, it will be counting the hours, and then the minutes . . .  

August 6, 2008

Link of the Week - LHC, the (underground) movie Image courtesy of Alpinekat, some dancers who prefer to remain anonymous, YouTube and US LHC Blog So, you think you have already heard of all the  ways in which the work of the Large Hadron Collider can be described?But have you seen the underground version?A music video was done on-site, in rap form, with portions filmed below ground in the tunnel near the supercooled magnets, making for a truly cool  movie. Posted to YouTube, it was put on the website of US LHC Blog—a neat site which has all kinds of unexpected stuff about particle physics, from A to Z. (Atlas to Z particle.)As for the rap, people posting to the US LHC Blog said it is not only “phat” (an acronym which The Online Slang Dictionary speculates could mean “pretty hot and tasty”) but has “mass.” See for yourself! —Dan Drollette, iSGTW

July 30, 2008
iSGTW Link of the week - Life sciences database

Link of the week - Life sciences database Image courtesy of lsdb.bii.a-star.edu.sg  Directory service systemThe Life Science Database Directory aims to be a one-stop directory service for Life Science related databases. This effort is coordinated by the Life Sciences Virtual Grid Community (chaired by Dr. Patrick Tan, NCC) under the umbrella of Singapore's National Grid, with contributions from many organizations.Find:Life sciences mirrored databases Post publication databases  Read more.  

July 23, 2008
iSGTW Link of the week - ACTION-Grid

Link of the week - ACTION-Grid for healthcare Image courtesy of ACTION-Grid ACTION-Grid is a specific international cooperation project on healthcare information systems based on grid capabilities, Biomedical Informatics (BMI) and nanoinformatics between Latin America, the western Balkans and the European Union. This project is supported by the EU’s Seventh Framework Programme with funding totalling some €1 million. ACTION-Grid started 1st June 2008 and will run for a period of 18 months.ACTION-Grid aims to expand previous initiatives to create a common health information infrastructure in Europe, and extend it to other regions. It aims to enhance cooperation between research centers, universities, hospitals, SMEs, public entities and others, and expand the impact of EC achievements in grid and BMI to researchers, educators and health practitioners world-wide.Read more.  

July 9, 2008

Link of the week - People behind the projects Clockwise from top left: Andoena Balla, University of Cyprus; Aaron Pondayi Masina, Chinhoyi University of Technology; Asterios Katsifodimos; University of Cyprus; Peter Hobson, Brunel University.Images courtesy of GridCafe Grid computing isn't faceless, nameless, sterile technology. Real people make it tick.  Who are these people and what makes THEM tick? Find out on CERN's GridCafé Web page People behind the projects. You'll find dancers, runners, music lovers, doting parents, cyclists, shoppers and pilots. People who felt their drive towards computers early in life and others who at the age of five envisioned a life under the hot sun in a tractor. People who want to bring opportunities and prosperity to their part of the world. People who love computers and think the grid is cool. People looking for the quickest path to discovery. People inspired by Ian Foster, by brain drain, by the Matrix.It really takes all kinds.  And what kind are you?  GridCa

July 2, 2008

Image of the week - Fun factoids “We report, you decide.”Image courtesy of YouTube“Developers of the grid say the net will be obsolete . . . ” “You'll be able to download a full-length feature film in seconds.” “The first test (of the grid) is this gigantic atom-smasher. Assuming it won’t blow up the world, which there is some talk it will do . . .”These were just some of the things said about the grid in a 2-minute story on a well-known cable news channel whose motto is “Fair and Balanced.”However, it is fun to watch what feels like a physics version of the spoof ‘news’ program The Daily Show.But we shouldn’t pick on any one media outlet. engadget summed up some of the more outrageous coverage with the headline “CERN creates a new super-fast internet, invites tons of people to a deathmatch.”In an effort to set the record straight—and give at least some credit wher

June 25, 2008

Link of the Week - Username: Bond, James Bond. Password: 007 Image courtesy of Vinicitrice, sxc.hu This week’s Link of the Week is a secret. So secret, in fact, that we’re not even sure what its real website address is.Sure, you’ve heard of Wikipedia, the site where users can upload and download information from any remote location, adding to the body of knowledge about almost any given topic. But have you heard of . . . Intellipedia?Don’t be surprised, we never heard of it before either. Briefly put, it’s a Wikipedia for the James Bond crowd. Funded by various government agencies—including the U.S. Central Intelligence Agency—the idea is that this is a clearing house of information for . . . well . . . spies. According to the on-line press and a lecture given by Intellipedia operatives at a public conference in Boston on 10 June, there are three layers of access—some of which involves distributed computing—open to those with the right kind of clearance to Confidential, Se

June 18, 2008
iSGTW Link of the week - W3C eGovernment activity to help empower citizens

Link of the week - W3C eGovernment activity to help empower citizens Image courtesy of W3C W3C launched a new forum for governments, citizens, researchers, and other stakeholders to investigate how best to use Web technology for good governance and citizen participation.“I encourage people from government agencies to join this W3C forum to make the Web better serve the people,” says Tim Berners-Lee, W3C Director.  “Open Standards, and in particular Semantic Web Standards, can help lower the cost of government, make it easier for independent agencies to work together, and increase flexibility in the face of change. Publishing Linked Data on the Web enables creative re-use of it — citizen mashups, and commercial mashups, which combine the data from many sources to stunning new uses,” Berners-Lee adds. “By joining this forum, you can learn good eGovernance and how to build an Open Standards platform on top of your existing tools and services.” eGovernment refers to the use of the Web or

June 11, 2008
iSGTW Image of the Week - A slimmer Milky Way

Image of the week - A slimmer Milky Way Our sun lies about 25,000 light years from the center of the Milky Way galaxy, roughly halfway out in the galactic disk. The new mass determination is based on the measured motions of 2,400 “blue horizontal branch” stars in the extended stellar halo that surrounds the disk. These measurements reach distances of nearly 200,000 light years from the galactic center, roughly the edge of the region illustrated above.The visible, stellar part of our Milky Way in the middle is embedded into its much more massive and more extended dark matter halo, indicated in dim red. The 'blue horizontal branch stars' that were found and measured in the SDSS-II study, are orbiting our Milky Way at large distances.From their speeds the researchers were able to estimate much better the mass of the Milky Way's dark matter halo, and found it to be much “slimmer” than thought before.Image courtesy of SDSS Collaboration, Axel Quetz, Max Planck Institute for Astrophysics, HeidelbergThe

June 11, 2008
iSGTW Link of the week - PSC tornado animation

Link of the week - Children’s publication features tornado animation Simulated Twister This sequence of frames from an animation, created by PSC visualization specialist Greg Foss, show the simulated tornado as it moves within the grid volume and evolves. (Darkness of gray shading corresponds to water concentration.)Image courtesy of Pittsburgh Supercomputing CenterThe online edition of the classic children's publication Weekly Reader recently featured a tornado animation produced at Pittsburgh Supercomputing Center. PSC visualization specialist Greg Foss created the animation from a simulation by University of Oklahoma scientist Ming Xue. Xue, director of the Center for the Analysis and Prediction of Storms at Norman, used PSC supercomputing to simulate a 1977 supercell storm system and the high-intensity tornado it spawned. The results—which capture the tornado’s vortex structure, with wind speed of 260 miles per hour—represent the highest resolution simulation ever done of an entire thunderstorm and

May 28, 2008

  Link of the week – The grid: separating fact from fiction Image courtesy of DEGREE. Grid computing revolutionizes the way scientists share and analyze data by enabling researchers to share computer power and data storage over the Internet. Grid projects already help researchers search for new wheat genes, predict storms, and simulate the Sun’s interior, among other things. The 7000-odd physicists working on experiments at the Large Hadron Collider will rely entirely on grid computing, specifically on the Worldwide LHC Computing Grid, to connect them with LHC data.But recent reports on “the Grid” being developed for the Large Hadron Collider have promised much more than the technology can now—and in some cases will ever—deliver. Find out what about grid computing is fact, and what is fiction.

May 7, 2008
iSGTW Link of the week - Old friends and new: iSGTW, GridCafe, GridTalk and more

  Link of the week - Old friends and new: iSGTW, GridCafé, GridTalk and more The GridTalk project harnesses the successes of existing grid communication projects International Science Grid This Week and GridCafé, creating a central hub for European grid communications. GridTalk will also tackle new missions dedicated to deciphering grid policy and showcasing the human face of grid computing.Images courtesy of GridTalk A new editorial team...A big welcome to Dan Drollette and Anne Heavey, who will be producing all-new editions of iSGTW as of next week. Dan comes from a strong background in science journalism and Anne has been an iSGTW contributing editor since our launch. Both are keen to hear your grid-related news and announcements so please drop them a line anytime.A new partner and project...And welcome to EU project GridTalk. Co-funded by the European Commission, GridTalk was launched last week and aims to create a unified and cohesive approach to European grid communications. The projec

April 23, 2008

 

Link of the week - Salute to SALUTE

The Bulgarian team in charge of the SALUTE project is developing algorithms for studying quantum effects in semiconductor structures. These effects influence the design of nano-devices with improved performance.Images courtesy of SALUTE and Obscura

SALUTE—or Stochastic ALgorithms for Ultra-fast Transport in sEmiconductors—is a pilot grid application developed to solve computationally intensive problems in semiconductor physics.
Semiconductors—materials that can both conduct and insulate electricity—are invaluable to modern electronics. Their ability to conduct depends on the ability of “carriers”—electrons or phonons—to transport electrical charge.This carrier transport occurs on a quantum level: the temporal scale is so short it is measured in femtoseconds, where one femtosecond is 10-15 seconds, or one millionth of a nanosecond.
Simulations on this sort of scale rely on complicated integral eq

April 16, 2008
iSGTW Link of the week - MathCell

Link of the week - MathCell The Mathcell project aims to create a multipurpose environment for obtaining new fundamental knowledge of the living cell biology.Image courtesy of MathCell The living cell is one of the world’s most complex dynamic systems. Now a team from Russia is working to create a MathCell: a grid-managed multi-purpose environment for further research in biology and bioinformatics. The MathCell project integrates existing individual knowledge—including mathematical models, bioinformatics resources and computational facilities—into a system that will simulate cell processes at many different levels: from microscopic to macroscopic scales, and from picoseconds to the lifetime of a cell.Based at the Institute of Mathematical Problems in Biology at the Russian Academy of Sciences in Pushchino, the team is using the Russian Data Intensive Grid (RDIG) and the EGEE cyberinfrastructures to power the project. The MathCell environment will be useful for various biomedical applications.

April 9, 2008

Link of the week - The world’s most powerful computer? Luis von Ahn explains some brilliantly simple ways of harnessing the human mind for sophisticated computing.Image courtesy of Google engEDU, larger version onlineLuis Von Ahn thinks he could build the Empire State Building in 6.8 hours, or the Panama canal in less than a day. King of the CAPTCHA, Von Ahn’s research interests include encouraging people to work for free, catching cheaters online, and exploiting the parasitic relationship he says humans have with computers. “Tasks like image recognition are trivial for humans, but continue to challenge even the most sophisticated computer programs,” Von Ahn writes. “This talk introduces a paradigm for utilizing human processing power to solve problems that computers cannot yet solve.” Where many of us would turn to new and sophisticated software, Von Ahn thinks we each come pre-packaged with the software—and, it seems, the time—to perhaps even change the world.

April 2, 2008
iSGTW Link of the week - Money, infectious disease and Where's George?

Link of the week - Money, infectious disease and Where’s George? Dirk Brockmann introduces the idea that the models used to describe the spread of dollar bills through the U.S. are contributing to our ability to model and map the spread of infectious disease. (1 min 41)Money Circulation Science by Dirk Brockmann, YouTubeEver wonder where your money has been? Where’s George is the place to find out. Fueled by the volunteer efforts of more than 4.5 million registered users, Where’s George asks visitors to register the denomination, series and serial number of any U.S. dollar bill, along with their current ZIP or post code.In this way, Where’s George is tracking the movement of more than 142 million different bills, with a total value of over US$687 million dollars.Volunteer thinking; real resultsWhile Where’s George began as a just-for-fun project, it is beginning to have real-world implications: mathematical models developed to describe the geographic spread of money mapped using Whe

March 26, 2008

Link of the week - B.U.R.P This animation, intended to run in slow motion, was rendered using BURP, a project that uses BOINC software to gather spare CPU cycles in to a working professional-grade render farm.Animation by Schosch ProductionsBURP—or the Big and Ugly Rendering Project—is an alpha-phase project using BOINC-powered distributed computing to create a large, shared and publicly accessible render farm for generating 3D animations. The BURP render farm will be powered by its participants: artists who contribute their spare CPU cycles can themselves benefit from distributed access to the farm of spare cycles contributed by colleagues. The result? Professional, computer-generated rendering from your desktop, without the need to invest in expensive specialist equipment: animations that would take months to render on a single CPU can be completed in just days, and for a fraction of the price.The BURP Web site went online on 17 June 2004 and the project has since worked its way through several test phas

March 19, 2008

Image of the week - Window to a molecular world  The Vaccinia virus, a bundle of DNA comprising 250 genes, is a member of the poxvirus family and was key to World Health Organization efforts to eradicate smallpox. This image was produced using EGEETomo: grid-powered electron tomography.Image courtesy of Fernández, J.J.Electron tomography, also known as ET, provides researchers with a tiny window on to the alien world of molecular biology. The technology works by shooting electron beams through super-slim samples at different angles, producing data that can be pieced together to produce a three-dimensional structure. The technology is well suited to biological specimens such as chromosomes and viruses, providing nano-scale resolution for an all-new look at these target macromolecules.To achieve such resolution, ET demands sophisticated reconstruction algorithms. Where iterative algebraic algorithms yield high quality reconstructions, they are computationally expensive and their use requires high performance techniques.

March 19, 2008

Link of the week - Defibrillation of the heart What happens to the heart under the influence of electric shock? Defibrillation may be well used in hospitals, but the mechanisms behind it are still not fully understood.Image courtesy of National Grid ServiceStep inside the heart as part of the Integrative Biology Project, a consortium of researchers using e-science to combat fatal diseases.Members of this project, Blanca Rodriguez and her colleagues from the Computational Biology Group at the University of Oxford, are using the National Grid Service to power simulations of the application of electric shocks to both healthy and diseased hearts.Rodriguez hopes the simulations will help improve understanding of exactly how defibrillation, a common but poorly understood medical technique, works.The research involves running many sequential simulations, including parameter sweeps of variables such as shock strength and timing.250 milliseconds of data; 28 CPU hours of workTo obtain just 250 milliseconds of animated data, Rodriguez chu

March 12, 2008

Link of the week - How low can a Sudoku go? What is the minimum number of clues required to solve a Sudoku? The BOINC-powered Sudoku project is keen to find out.Image courtesy of the Sudoku project There are two ways to solve a Sudoku: by hand, or by writing a computer program to do it for you. For “ordinary” Sudoku—where you begin with 25 to 30 “clue” numbers—this is a relatively simple proposition. But what happens when you start with half as many clues? Can you still solve a Sudoku which begins with only ten clues? What about five clues? How low can a Sudoku go while still ensuring it has only one unique solution?Running the numbersSo far, all known minimal Sudokus with a unique solution begin with 17 “clue” numbers. Further, any puzzles with fewer than eight clues have resulted in at least two different solutions. Thus, minimal Sudokus are thought to require 8-17 numbers.A new BOINC-powered distributed computing project—Sudoku—is determined to close this gap, aiming

March 5, 2008

Link of the week - Statistics from the 3rd EGEE User Forum As promised, the EGEE User Forum, held in Clermont-Ferrand, France, delivered great food, great wine and smelly cheese.Image courtesy of Y. Legré, HealthGrid, 2008Last month’s 3rd EGEE User Forum, held from 11-14 February in Clermont-Ferrand, France, attracted more than 300 attendees to more than 100 presentations, 19 demos and 36 posters. Plenary sessions included presentations on the European Grid Initiative Design Study , the High Energy Physics Grid and the SHARE project.The 19 demonstrated grid applications ranged from mathematical models of living cells to bioinformatics portals, as well as tools to make using grids simpler and easier to control. The Health-e-Child project, represented by Jerome Revillard and David Manset, won the prize for the best demonstration with their Gateway and Case Reasoner, a concrete implementation and use-case of a gLite-based healthgrid for European paediatrics. “EGEE plays an active and invaluable role by supporti

February 20, 2008

Link of the week - Kung Fu Panda digs grids Using grid computing, digital artists working on Kung Fu Panda are performing 75,000 to 100,000 batch-processing jobs each night, each ranging from a few minutes per frame to 15 hours per frame, depending on the rendering complexity of the digital frame sequence.Image courtesy of DreamworksGrid computing isn’t always about saving the world. It can be about creating a new world, in this case, the world of the Kung Fu Panda, a new animation feature by Dream Works to be released in June.Creating animation films like Kung Fu Panda typically requires around 25 million render hours from start to finish. The Dream Works computer farm comprises a 4000-processor Linux cluster, but when their digital artists are all simultaneously pinging the compute cluster to retrieve digital frame data, the system’s input-output comes under a lot of strain.Enter grid computing, in the form of Ibrix parallel file server software. DreamWorks added Ibrix to its animation system about six months ago,

February 13, 2008
iSGTW Link of the week - SHARE: who, what, when, how and in what order

Link of the week - SHARE: who, what, when, how and in what order Tony Solomonides speaks on behalf of the SHARE project at the opening plenary of this week’s EGEE User Forum in Clermont-Ferrand, France.Image courtesy of Yannick Legré, HealthGrid More than physics, more than astronomy, it is human health that captures the imagination of people across the planet. Whether it’s cancer or AIDS, aging or depression, health-related issues have an immediate and universal appeal that has powered the rise of several healthgrid-related projects. Now, a new project has arrived to bond and unite heathgrid projects from around the globe.SHARE and share alike  Called SHARE, or Structuring and supporting Healthgrids Activities and Research in Europe, the project unites collaborators working towards a common goal: better healthcare through the development of grid-powered e-science. “SHARE aims to develop a roadmap for the wide adoption and deployment of grid technology for health in Europe,” explain

February 6, 2008

Link of the week - Weblin your way to cyber popularity See you on iSGTW?Image courtesy of weblin Tired of wandering cyberspace all alone? Give yourself a presence on the web using weblin, software that allows people browsing on the same Web page to see and communicate with each other.Apparently, having a weblin allows you to communicate with the different people you run in to while on your favorite sites, thus enriching the web surfing experience. According to the Web site, weblins can “help people to improve their virtual lives” and “secure their presence on the Web.”The free software allows you to choose an animated weblin character that “looks like you, or looks how you would like to appear.”Your weblin includes a public profile and “speaks” to other weblins using good old-fashioned cartoon-style speech bubbles. A weblin of few words? You can also rely on body language, including waves, smiles, frowns and evening a little dancing.If you’re no longer interested in chatting t