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October 17, 2007

Image of the week - Stellar performance Giant cell convection patterns like this are giving scientists an unprecedented view of the solar interior thanks to a new model powered using Teragrid.Image courtesy of Mark Miesch, NCAR and UCARFar beneath the Sun’s surface, scientists suspect there are churning masses of plasma up to ten times larger then Earth. These masses, known as giant cells, play a critical role in solar variability, influencing magnetic storms that take aim at Earth to affect satellites as well as power and communications systems.A new model developed by a team of scientists led by Mark Miesch of the National Center for Atmospheric Research is able to simulate the convection patterns of these giant cells, providing an unprecedented view of how the solar interior works.“It opens a window on a number of important solar processes, including the delicate balance of forces that causes the Sun’s equator to rotate faster than its poles,” says Miesch. “This is our first indication of what the c

October 10, 2007

Image of the week - Acoustic field of a supersonic jet Shock-induced noise plays an important role in “jet screech”, a strong, sharp peak in sound pressure corresponding to high-pitched noise of up to 160 decibels, loud enough to potentially damage aircraft parts that are near the nozzle.Image courtesy of Jan Schulze and Jörn SesterhennSpend some time at the exit nozzle of a supersonic jet engine and you’ll soon notice it’s a rather loud place to play. Much of the shock-induced noise is caused because the nozzle exit pressure differs from ambient air pressure, which results in a series of shocks, compressions and expansions that interact until the differences in air pressure have been resolved. Many of the physical processes responsible for this process have not yet been clearly identified, which is why Jan Schulze and Jörn Sesterhenn of UniBW Munich are working to find out more.Schulze and Sesterhenn used direct numerical simulations to compute a three-dimensional supersonic rectangular jet that

October 3, 2007

Image of the week - European Grid Initiative steps out with EGEE crowd Delegates from the EGEE ’07 conference are enjoying a packed program of sessions covering grid operations, applications, security, interoperability, middleware and more. The European Grid Initiative Design Study workshop attracted many and marked a concrete step towards realization of the EGI project.Images courtesy of Toth Csilla This week’s EGEE ’07 conference attracted more than 600 delegates and it felt like most of them attended Tuesday’s workshop on the status of the European Grid Initiative. The room was bulging before the session had even started. When Dieter Kranzlmüller of Johannes Kepler University Linz, Austria, opened proceedings with an overview of the EGI Design Study (EGI_DS) project, he was speaking to an audience straining to see more.Vision for a pan-European grid infrastructureThis first EGI_DS workshop marked a very concrete step towards realization of the EGI project: an endeavor that has already garnered the

September 26, 2007

Image of the week - World Trade Center North Tower at 0.37 seconds Computed damage to the core structure of the World Trade Center North Tower, 0.37 seconds after impact.Image courtesy of Mete Sozen, Ayhan Irfanoglu and Christoph HoffmannThe Northwest Indiana Computational Grid and Purdue’s Network for Computational Nanotechnology have provided the infrastructure support for large-scale simulations of the effects of crashing an air frame loaded with fuel—similar to a Boeing 767-200ER—into a steel and concrete structure—similar to that of the World Trade Center North Tower.Results from the simulations are being used to understand the extent of the damage caused by the impact.The modeled airframe is loaded with the approximate amount of fuel and set to impact the WTC-1 building at the speed, position and orientation published in official reports.The simulation models both the exterior building skeleton and the core support structure of the building, as well as concrete floors and supporting girders.The simulat

September 19, 2007
iSGTW Animation of the week - Our evolving universe

Animation of the week - Our evolving universe The animation shows the universe evolving from about 200 million years after the big bang until about five billion years, approximately what it looks like today, with brightness corresponding to gas density.Image courtesy of Pittsburgh Supercomputing Center Despite their ubiquitous presence, black holes and the quasars they spawn have been absent from large-scale simulations of the universe, until now. Carnegie Mellon University theoretical cosmologist Tiziana Di Matteo and her colleagues can now include black holes in a simulation encompassing a sizeable fraction of the universe, thanks to the resources of TeraGrid.Perhaps one of the most exciting end products of this huge calculation is an animation showing how the universe evolved over 14 billion years. The simulation begins before galaxies have formed, and the early frames (each frame is about half a million years) show a virtually uniform universe, corresponding well with the picture provided by cosmic microwave background stud

September 12, 2007

Image of the week - CERN’s PC grid goes TOP500 CERN’s computer cluster recently rated 115 in a list of the 500 most powerful computing systems in the world. It is the Tier-0 site for the Large Hadron Collider Computing Grid and consists of 340 servers with two Intel Xeon 5160 (Woodcrest) processors and a total of 1360 cores.Image courtesy of CERNCERN’s computer cluster consists of 340 servers with two Intel Xeon 5160 (Woodcrest) processors and a total of 1360 cores. The cluster recently made its first appearance on the prestigious TOP500 Supercomputing Sites, a sign that the processing power of the individual computing centers comprising grids is reaching levels comparable to top supercomputers.The CERN cluster is one of only a few commodity clusters in the most recent TOP500 list and ranked a respectable 115th in the world—not bad for a bunch of PCs! Significantly, CERN achieved this result using only about 20% of the computing power available in its computer centre, which in turn is only a fraction of the

September 5, 2007
iSGTW Image of the week - Solar magnetic fields

Image of the week - Solar magnetic fields A simulation of the 3D magnetohydrodynamics at play in the outer third of a star. Each “hair” represents a magnetic field line embedded in the stellar plasma flow. Near the equator, the convective flows tend to align with the axis of rotation; in higher latitudes the convection is more cyclonic. Image produced using VAPOR Complicated by wild convection occurring in the outer third of a star’s plasma, and by rotation that twists a star’s magnetic field into a spiral, stellar magnetohydrodynamics really is as complex as it sounds.Magnetohydrodynamics is the study of motion and magnetism in conducting fluids such as plasmas, liquid metals and seawater. The “hydro” bit refers to fluids, the “dynamics” bit means movement, and the “magneto” part comes into play because magnetic fields induce currents in moving conductive fluids, and are themselves amplified by the fluids’ motions.So when the moving conductive fluid you’re disc

August 29, 2007
iSGTW Image of the week - Anti-cancer agent in watery bind

  Image of the week - Anti-cancer agent in watery bind Water molecules bind to anti-cancer agent 5-fluorouracil to prevent formation of a newly discovered form II polymorph. All molecules are immersed in liquid nitromethane, which is not shown for reasons of clarity. Image courtesy of Said Hamad These images show the interactions of water molecules with each other and with molecules of anti-cancer agent 5-fluorouracil in nitromethane solution. These interactions are strong enough to prevent the formation of 5-fluorouracil clusters, which in turn prevents the formation of a more stable 5-fluorouracil polymorph: the elusive “form II”. Only when water molecules are completely absent from the system will “form II” crystals appear. This molecular dynamics investigation was carried out by investigators now at the University College London, as part of the Control and Prediction of the Organic Solid State project.CPOSS is dedicated to predicting the crystalline structures of organic molecules and uses the e-sc

August 22, 2007

Image of the week - Dirty laundry: what really goes on at grid summer schools The grim truth behind the exotic image: Apparently grid summer schools aren’t as squeaky clean as they make out!Image © Harald BarthProviding an inside peek into the real nuts and bolts of a working grid summer school, this image was taken at the 5th International Summer School on Grid Computing, held in Mariefred, Sweden, from 8-20 July 2007.The school attracted 62 students from various backgrounds, introducing them to different grid technologies during lectures and practical sessions. According to one student, the school provided “an experience in developing and using our own strategies with grid technologies.”Another highlight of the summer school was “the community, by far the best asset.”And as this picture suggests, the school provided many opportunities for students to get to know each other on an entirely new level... Even scientists need to wash.   

August 15, 2007

Image of the week - Fishy business Each fish represents the health of a single node in a computer cluster. This particular aquarium is monitoring two clusters. Image courtesy of University of Nebraska Think something’s fishy with one of your nodes? You don’t need to fish for answers any more.Get hooked on Fish Virtual Cluster Monitoring, a program that uses Ganglia to portray each node in your cluster as a fish.Each swimmer comes complete with all the usual fishy attributes, used to describe the state of each of your nodes (watch for the ones that go belly-up and then float to the top).Electronic grid-fish have reared their pixilated fins in various other forms, including regular appearances as part of the Globus Build-A-Service tutorial.The program delivering the pictured fish was produced by Derek Weitzel of the University of Nebraska, Nebraska, U.S., and expands on work done by Cory Leuninghoener. It is open source and can be freely downloaded.- Cristy Burne, iSGTW 

August 8, 2007
iSGTW Feature - Picture this: visualization as a tool for data analysis

Feature - Picture this: visualization as a tool for data analysis This is one image from a 3000-frame visualization showing air movement around Osprey rotors. It is one of visualization expert Kelly Gaither’s all-time favorites.Image courtesy of Kelly Gaither Transformers are no longer just toys from the 1980s.Bell-Boeing Ospreys are a real-life example of a transforming machine; they can begin flight as a helicopter, with rotors on top, and change mid-flight to operate like an aeroplane, with rotors in front. A few years ago, however, after two Osprey accidents, the United States government grounded the fleet. “The planes were having problems during the rotor transition,” says Kelly Gaither. “Our job was to figure out why.” Gaither is a visualization expert at the Texas Advanced Computing Center. She and her team simulated, visualized and created a 3000-frame movie to show air movement around the Osprey during transition.Where art meets science“When creating this movie, I had a chance to be jus

August 8, 2007

Image of the week - Electric sheep Computers running the Electric Sheep screen saver work together to create a morphing population of animations known as  “sheep.”Image courtesy of Scott Draves and the Electric Sheep Electric Sheep is a free, open source screen saver and an example of distributed computing, perhaps at its wierdest.Computers running the Electric Sheep screen saver share results, working together to create morphing abstract animations, referred to as “sheep.” Users vote for their favorite animations; the more popular sheep live longer, reproducing according to a genetic algorithm. The electric “flock” hence evolves to please its global audience. Users can also design their own sheep for submission to the “gene pool.”The result is billed as a collective “android dream,” homage to Philip K. Dick’s novel Do Androids Dream of Electric Sheep?, the book that birthed the sci-fi cult film Blade Runner.  

August 1, 2007

Image of the week - The Internet from space? Graph theory analysis and distributed computing have combined to provide this all-new view of the Internet, generated using the Lanet-vi program.Image courtesy of the Proceedings of the National Academy of Sciences of the United States of America Ever wonder what the Internet looks like? Now, thanks to distributed computing, you can see for yourself.The Internet’s incredible complexity makes mapping it an ongoing challenge. Sure, with the right software you can track data packets as they zip around in cyberspace, but unless enough people are running this software, you’ll only see a fraction of the action.What might make it possible to gather enough information?One answer is distributed computing, along with a team of researchers at Tel Aviv University, Israel.To meet the challenge of collecting such massive amounts of data, the team developed the Distributed Internet Measurement and Simulation (DIMES) project, recruiting volunteers to download and run a tracking program on

July 18, 2007

Image of the week - Does this compute? Not really “Scientists from the Rand Corporation have created this model to show how a home computer will look like in the year 2004. However, the needed technology will not be economically feasible for the average home. Also the scientists readily admit that the computer will require not yet invented technology to work, but 50 years from now scientific progress is expected to solve these problems. With teletype interface and the Fortran language, the computer will be easy to use.”This image, supposedly from Popular Mechanics magazine, allegedly shows a 1954 scientists’ impression of how home computers might look in 2004.In fact, it’s a doctored picture of a submarine control room, submitted as part of an image modification contest and then circulated in an Internet hoax.The hoax fooled more than a few IT gurus, including Lotus founder Mitch Kapor, and Chief Executive of Sun Microsystems, Scott McNealy. Whoops.  

July 11, 2007

Image of the week: Close the cellular gates Cells contain tiny protein “gates” that can allow material to enter the cell, or can shut to isolate the cell from the outside. These images show two dimensional slices through such ion channel “gates,” showing changes in electrical potential in response to membrane stimuli. Image courtesy of Reza Togharee, University of Illinois at Urbana-Champaign, USHow does a cell in osmotic shock protect itself from bursting? Studies suggest large membrane proteins may act as safety valves, shutting the gateways to the cell. These membrane proteins, known as Mechanosensitive Channels of Small Conductance, or MscS ion channels, open and close in response to stimuli received at the cell membrane. The images on the right show two-dimensional slices through such MscS ion channels, simulated with a BioMOCA—biological Monte Carlo—ion channel simulator. Color indicates electrostatic potential, in volts, along with potassium and calcium ion concentrations after 100 nanos

July 4, 2007

Image of the week - A rising valley Rising lowland: last summer an expansion of magma pushed up an area of Hawaii’s Kilauea crater.Image courtesy of the Advanced Land Observing Satellite, JapanA section of the Kilauea volcanic crater on Hawaii Island, U.S., rose about 10 centimeters in just three months last summer. The change was due to an expanding magma reservoir, observed by the PALSAR Phased Array type L-band Synthetic Aperture Radar, onboard the spacecraft “Daichi”.  The image on the right uses colors to show the degree of the diastrophism, or land change, observed. Warm colors show a reduction in the distance between the satellite and the land, indicating that the land has risen; cold colors show an increase in this distance, indicating subsided land.PALSAR is one of three remote-sensing instruments on Japan’s Advanced Land Observing Satellite. Images such as these are produced using data grid and computing grid technology as part of the Global Earth Observation Grid framework. Such images, comb

June 27, 2007

Image of the week - Dynamics of cortical change Brain tissue loss over a five-year interval; severe loss is shown in pink. Schizophrenia patients (right) experience more rapid brain tissue loss than their healthy counterparts (left).Image courtesy of Paul Thompson, Laboratory of Neuro Imaging, University of CaliforniaSchizophrenia, a brain disease where sufferers have trouble differentiating the real from the imagined, can be traced as far back as ancient Egyptian papyrus writings that chronicle mental disorders. About one percent of the world’s population, across all times and cultures, suffer or have suffered from schizophrenia. This disease, which is not the same as split- or multiple-personality syndrome, usually begins in late adolescence through to mid-adulthood. As it progresses the brain alters in structure and chemistry as well as function. Schizophrenia research at the Laboratory of Neuro Imaging at the University of California, Los Angeles, (LONI) seeks to map, measure and visualize changes in the brain as a

June 13, 2007
iSGTW Image of the week - Tissue analysis with grids

Image of the week - Tissue analysis with grids An example of test analysis: left, the input image, a tissue slice from a donor; right, the slice digitized.Image courtesy of Federica Viti, Università degli Studi di GenovaIn the ongoing battle against disease, some researchers are taking standard tissue analysis a step further: a technique known as tissue microarray analysis, or TMA, helps researchers search tiny pieces of tissue for traces of disease. Digitizing these images allows them to be analyzed and shared with the help of computers. Using digitized TMA, researchers can access and analyze many tissues at once, saving time and expense. Although sharing images between institutions certainly increases a researcher’s resources, it can also add to their data burden, and it can also raise concerns about patient privacy.  A team from the Institute for Biomedical Technologies, National Research Council in Milan, Italy, and the Institute for Applied Mathematics and Information Technology, National Research Council in

June 6, 2007

  Feature - Working the Camera: Real-Time Grid-Powered Surveillance The inside of supercomputer Kentucky ASYmmetric Zero, as captured by a grid-controlled camera. This image is updated about every 45 seconds.Image courtesy of the University of Kentucky Two people happen to meet in a hallway. They begin to chat, and end up in deep discussion. Suddenly, on the wall beside them, projected images appear. Video clips. Sounds. Information directly relevant to their discussion. And all made automatically available, where and when they need it most. This is the vision for the University of Kentucky’s Ambient Virtual Assistant, a real-time grid application framework for managing grids that combine multiple sensors and output devices.“You could think of AVA as a large-scale surveillance system, but it’s much more than that,” explains Hank Dietz of the University of Kentucky’s Center for Visualization and Virtual Environments.  “The concept is to have the ambient environment constantly monitoring

June 6, 2007

Image of the Week - Science on Top of the World  Scared of heights? Don't look down. And don't get too excited about all those gamma rays and start hyperventilating: the partial pressure of oxygen at this laboratory is about half that at sea level.Image courtesy of EUChinaGRIDBeing 4,300 meters above sea level brings you closer not only to the stars, but also to the things stars spit out: gamma rays. For researchers eager to detect these gamma rays before the rays are absorbed by the atmosphere, this is a good place to be, or at least, it is a good place to put your equipment. In Tibet, 90 kilometers north of Lhasa, sits the High Altitude Cosmic Ray Laboratory. The lab, run by a Chinese-Italian collaboration, will use the EUChinaGRID infrastructure to store and transfer data so it can be accessed by collaborators around the world.EUChinaGRID expects to transfer 250 terabytes a year to Beijing, and then on to Italy, at the steady rate of around 10 megabytes per second.

May 30, 2007

Image of the Week - Wim Klein  Wim Klein, known as one of the fastest “human computers” in the world, gives a demonstration of his mathematical prowess.Image courtesy of CERNPut down your high powered computers for just a second to pay homage to Willem (Wim) Klein, a man whose incredible calculation abilities earned him the nickname of “human calculator.”A quirky part of early computing history, Wim was recruited to CERN, the European Organization for Nuclear Research, in 1957. He was tasked with the challenge of double-checking the results of CERN’s early computer programs.Wim not only checked the computer’s results, he regularly beat them to the answer. His mathematical prowess was such that hundreds of physicists and mathematicians would gather from around the world to watch him at work.During one such demonstration, in September 1973, Wim calculated the 19th root of a 133-digit number in one minute and 43 seconds. Unsatisfied with this tremendous feat, he went on to improve his time, con

May 23, 2007
iSGTW Image of the Week - Studying the Process of Learning

Image of the Week - Studying the Process of Learning   A simulation by the Virtual Cell project of a membrane reaction in a neuronal dentritic spine, one of the key aspects of learning and memory.Image courtesy of Virtual CellWant to learn more about how you learn? Our neuronal system lies at the root of learning and thought. Neurons communicate among themselves and with rest of our bodies using electrical and chemical signals. The points of communication between neurons are synapses. At a synapse, a signal received from outside the cell may or may not trigger a chain reaction that propagates the signal to other cells. After a time, synapses, on tiny protrusions called spines, can become sensitized or desensitized to certain chemical signals, known as neurotransmitters. The next time that synapse receives that neurotransmitter it may be extra responsive, or it may ignore it completely. This helps our brain organize itself in to neuronal circuits—paths of often-used neurons. Currently, researchers

May 9, 2007
iSGTW Image of the Week - Family Album

Image of the Week - LHC Family Album Schematics of the detectors for the main physics experiments at the Large Hadron Collider.Image courtesy the ALICE, ATLAS, CMS and LHCb experimental collaborations  When the Large Hadron Collider at CERN, Europe’s center for high energy physics, begins colliding particles in 2008 it will provide proton collisions for four large physics experiments that will expand our understanding of the workings of the universe. The ATLAS and CMS collaborations designed multi-purpose detectors; these will hunt for the Higgs boson, traces of supersymmetry and evidence of extra dimensions, among other things. ALICE aims to study the quark-gluon plasma, a new phase of matter expected at extreme energy densities. LHCb will examine beauty quark physics. Photos of the people, equipment and recent activities of the LHC experiments are posted on the CERN Document Server.

May 2, 2007
iSGTW Image of the Week - Neurons in Action

Image of the Week - Neurons in Action Simulation of calcium levels in nerve cells after stimulation.Image courtesy Ion Moraru, University of Connecticut Health Center  The Richard D. Berlin Center for Cell Analysis and Modeling at the University of Connecticut Health Center focuses on creating new technologies for understanding the dynamic distributions of molecules in living cells. CCAM is the home of the Virtual Cell, a grid-enabled tool to build models and run cellular simulations. The Virtual Cell can model the reactions, diffusion, membrane transport, flow, electrical potential and currents within a cell. Users can create compartmental or spatial simulations (1-D, 2-D or 3-D) on analytical or image-based geometries. The image at the right, taken from a presentation given by Ion Moraru at the 2007 Open Science Grid All Hands meeting, simulates a wave of calcium influx into nerve cells after simulation.

April 25, 2007

Image of the Week - Warpings of Space-time Poster created for the Theoretical Particle Physics and Cosmology group at the Niels Bohr Institute by artist-in-residence Mette Høst. Click to see full image. Image courtesy of Mette HøstIn a recent project, artist-in-residence at the Niels Bohr Institute, Mette Høst, created posters for the NBI’s individual research groups. Høst worked with each group to find an image and equation that captures the heart of the group’s research with beauty and elegance. Høst, created the image at the right for the Theoretical Particle Phyisics and Cosmology group, expressing a visualization of the warping of space-time. The research of the Theoretical Particle Phyisics and Cosmology group centers around quantum theories of gauge fields, gravity and astrophysics. Areas of specialization include the Standard Model, quantum chromodynamics, lattice simulations, cosmology, physics of cosmic microwave background, black holes, matrix theory and string theory. More