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Content about Health

October 17, 2007

  Feature - Connecting the cancer community through grid technology The National Cancer Institute cancer Biomedical Informatics Grid (caBIG) is designed to accelerate progress against cancer by uniting and linking research efforts from across the cancer community. Image courtesy of NCI caBIG In the world of cancer research, “connectivity” is becoming increasingly important: laboratory and clinical information are being generated in vast quantities and at increasing rates, and using this data to improve patient outcomes requires truly interoperable informatics systems. “The current cancer community is broken up into small and fragmented units,” says Kenneth Buetow, associate director for Bioinformatics and Information Technologies at the National Cancer Institute in the U.S. “We need to have effective means by which we can bring the important, disparate parts of the community together so that the whole can be more than the sum of the parts.”Linking researchers, physicians and patientsTo fac

September 12, 2007
iSGTW Feature - ViroLab: a grid-based decision support system for HIV infections

  Feature - ViroLab: a grid-based decision support system for HIV infections According to UNAIDS reports, 38.6 million people were living with HIV/AIDS in 2005, up from 36.2 million in 2003.Image courtesy of ViroLab Medical doctors and researchers have more information at their fingertips than ever before. They can now study diseases from the DNA level all the way up to medical responses, thanks to the increasing availability of genetic information, extensive patient records, and large, high quality clinical and pharmacological databases.  To coordinate this wealth of information medical doctors and researchers must have integrative technology that bridges existing gaps in multi-scale models, data fusion and cross-disciplinary collaboration. It is here that distributed computing—and grid technology in particular—can play a crucial role in helping researchers to understand the processes involved in new biomedical e-science, from bioinformatics to heath informatics.Virtualized tools; personalized treatment Vi

September 5, 2007
iSGTW Feature - Grids: a global home for serious science

  Feature - Grids: a global home for serious science World Community Grid has more than 315,000 members, running nearly 700,000 computing devices. Image courtesy of World Community Grid Just two weeks ago, public grid project World Community Grid launched their newest project: a global computing effort to find cures for dengue, West Nile and hepatitis C diseases. Since 2004 World Community Grid has run seven projects, and already this year, science conducted using World Community Grid has resulted in the publication of two scientific papers in peer-reviewed journals, with several more papers scheduled for the latter half of 2007. The first paper detailed results from the Human Proteome Folding project and was published in PLoS Biology, a journal of the Public Library of Science; the second showcased results from Fight AIDS@Home and was published in the ACS Journal of Chemical Information and Modeling.Hot on their scientific heels are papers expected from a U.S. team working on a cancer tissue microarray project, a French

August 29, 2007

  Feature - Thailand goes tera: scientists connect to the power of ThaiGrid ThaiGrid powers this tsunami simulation, run by a team from Chulalongkorn University, Thailand, and focusing on the potential effects of tsunamis in the Indian Ocean.Image courtesy of ThaiGrid Scientists across the globe are cranking up their computing requirements: they want more processing power to tackle ever more challenging problems. The wishes of Thai scientists recently came true when their first teraflop computing system went online as part of the Thai National Grid Project.“Our demand for computational power and storage is increasing rapidly,” says Putchong Uthayopas, director of the Thai National Grid Project. “We had a need for a national computational infrastructure that would allow researchers to discover and explore more challenging problems,” he says. “The Thai government decided that now was the right time to explore grids as a key infrastructure enabler.”80 systems across 15 sites Comprising 1

August 29, 2007
iSGTW Image of the week - Anti-cancer agent in watery bind

  Image of the week - Anti-cancer agent in watery bind Water molecules bind to anti-cancer agent 5-fluorouracil to prevent formation of a newly discovered form II polymorph. All molecules are immersed in liquid nitromethane, which is not shown for reasons of clarity. Image courtesy of Said Hamad These images show the interactions of water molecules with each other and with molecules of anti-cancer agent 5-fluorouracil in nitromethane solution. These interactions are strong enough to prevent the formation of 5-fluorouracil clusters, which in turn prevents the formation of a more stable 5-fluorouracil polymorph: the elusive “form II”. Only when water molecules are completely absent from the system will “form II” crystals appear. This molecular dynamics investigation was carried out by investigators now at the University College London, as part of the Control and Prediction of the Organic Solid State project.CPOSS is dedicated to predicting the crystalline structures of organic molecules and uses the e-sc

August 15, 2007
iSGTW Feature - Bloody great science: Parallel Blood Flow Simulation using grids

  Feature - Bloody great science: Parallel Blood Flow Simulation using grids The Parallel Blood Flow Simulation package can automatically calculate blood flow and use medical images to generate a 3D computer model of your arteries. Customized visualization techniques then show the artery areas that are risky and critical to disease development.Image courtesy of the University of Karagujevac For more than a decade, surgeons have been able to insert video cameras into your arteries and scan your “intra-artery” footage for signs of weakness or clogging. If your doctor spots a problem, it can often be fixed using a tiny device called a stent: a ring of wire mesh inserted at a crucial point inside your artery. If positioned correctly, a stent can support a weak section of artery wall from the inside, or keep a clogged artery sufficiently open for business. Thanks to grid-enabled e-science, this life-saving technology is set to get even more high-tech. Inside your virtual arteriesA team at the University of Krag

July 11, 2007
iSGTW Feature - To bee, or not to bee? Bee society and the human condition

  Feature - To bee or not to bee? Bee society and the human condition The honey bee’s “waggle dance” is the only symbolic language found beyond the primates. New genomic data yielded by grid-powered research could help reveal the basis for this and other social interactions.Stock image from sxc.hu The humble honey bee: pollinator, producer of honey, and potential key to unlocking the secrets of human social interaction. Why is it some bees can be queen? How can a nurse bee suddenly transform into a forager, just when foragers are needed most? And how can these furry flying insects cast light on our own human behaviors? The answers lie in the interactions of genes in the honey bee genome. And Saurabh Sinha needs grid computing to seek these answers out. “The honey bee can be a model to understand complex societies,” explains Sinha, a professor of computer science and affiliate of the University of Illinois’s Institute for Genomic Biology. “By studying the social regulation of gene ex

May 23, 2007
iSGTW Image of the Week - Studying the Process of Learning

Image of the Week - Studying the Process of Learning   A simulation by the Virtual Cell project of a membrane reaction in a neuronal dentritic spine, one of the key aspects of learning and memory.Image courtesy of Virtual CellWant to learn more about how you learn? Our neuronal system lies at the root of learning and thought. Neurons communicate among themselves and with rest of our bodies using electrical and chemical signals. The points of communication between neurons are synapses. At a synapse, a signal received from outside the cell may or may not trigger a chain reaction that propagates the signal to other cells. After a time, synapses, on tiny protrusions called spines, can become sensitized or desensitized to certain chemical signals, known as neurotransmitters. The next time that synapse receives that neurotransmitter it may be extra responsive, or it may ignore it completely. This helps our brain organize itself in to neuronal circuits—paths of often-used neurons. Currently, researchers

May 16, 2007
iSGTW Feature - Health-e-Child Prepares for Deployment

  Feature - Health-e-Child Prepares for DeploymentMembers of the Health-e-Child team preparing hardware for deployment in hospitals.Image courtesy of David Manset Between now and the end of the May, members of the Health-e-Child collaboration will crouch over their newly arrived servers, installing and testing software, as part of a project they hope will revolutionize pediatrics in Europe. When the servers are installed and turned on at hospitals in London, Paris and Genoa they will be crucial nodes of the Health-e-Child infrastructure. “The knowledge produced in hospitals is important to share,” says Konstantin Skaburskas, lead technical specialist for Health-e-Child. “We are creating a repository which will allow pediatricians to share their knowledge online.” Health-e-Child, like its predecessor Mammogrid, is a distributed computing project that connects hospitals and participating institutions—allowing them to share integrated, multi-level information. Genetic, cellular, tissue- and organ

May 9, 2007
iSGTW Feature - New Weapons Identified in the Battle Against Hospital Superbugs

Feature - New Weapons Identified in the Battle Against Hospital Superbugs Each point represents a protein expressed in the bacterium Pseudomonas aeruginosa; each line represents known interactions between these proteins. This network shows the structure of interactions the cell depends upon, giving researchers a head start in the search for anti-bacterial drugs. Image courtesy of e-TherapeuticsFor the first time in decades researchers have announced the discovery of new antibiotics that use a truly novel approach in attacking bacteria. The grid-powered drug searches were conducted by a spin-out company from Newcastle University in the United Kingdom. E-Therapeutics found three new drugs that are effective against antibiotic-resistant superbugs, such as that scourge of hospitals, methicillin-resistant Staphylococcus aureus.The drugs entered clinical trials in February and should be available for use within two to three years. The techniques that enabled this discovery were developed by the UK e-Science Programme,

April 11, 2007

Feature - Pacific Rim Researchers Collaborate to Study Avian Flu Nations with confirmed cases of the H5N1 avian influenza as of February 2007.Source http://pandemicflu.govResearchers at the University of California, San Diego and the University of Hawaii will use bioinformatics, grid computing and networking infrastructure, as well as collaborative ties to Asian institutions, to learn more about avian flu, in hopes of helping to head off a much-feared pandemic in the region of the world where the disease has already cost human lives.“We will use modern high-throughput biology to annotate the biological structures of different subtypes of the avian influenza virus, at the same time as we study their variations,” said principal investigator Peter Arzberger, director of Life Science Initiatives at UC San Diego. “We will also construct a grid infrastructure to support avian flu research—an infrastructure that could one day handle research on other infectious diseases as well.”“Fighting a pandemic will