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Content about Environment

June 9, 2010

BP oil spill: Scientists mobilize to create new disaster response science

The Gulf's wildlife is increasingly being affected by the spill. Image courtesy of NOAA.

Less than two weeks after the BP Deepwater Horizon oil rig explosion killed 11 and began leaking between two and four million liters of oil per day, the calls started coming in. The oil would soon reach the Louisiana coast, where it would do untold amounts of damage to the local marshes, wetlands, and channels. Could the team that successfully modeled hurricane storm surges along the Louisiana, Mississippi, and Texas coastlines help?
“We started working on the project fairly quickly, probably around the 10th of May,” said Clint Dawson, head of the Computational Hydraulics Group at the Institute for Computational Engineering and Sciences at The University of Texas at Austin.
With the highly accurate descriptions of the Gulf of Mexico’s coastline Dawson and his colleagues previously used for hurricane si

June 9, 2010

Feature - Seeing particles with VPM

VPM Interview from Renaissance Computing Institute on Vimeo.

Before we can make use of data, we need to make sense of it. But with complex concepts such as particulate air pollution, you could just as easily drown in the data.
And that’s exactly what was happening when NASA first approached Uma Shankar, an atmospheric scientist at the Institute for the Environment at UNC Chapel Hill, to ask what sort of advanced visualizations the particulate matter research community needed.
After some thought, Shankar suggested an application to visualize particulate matter across the range of sizes in which it occurs.
“Particulate matter has such important impacts on a variety of air quality issues, especially human health” Shankar explained. “Now we better understand the connection between particulate matter and climate, so its importance is even greater than we originally understood.”
Despite this better understanding, the existing visu

June 9, 2010

Video of the Week - Simulations show scenarios for oil spill

This animation shows one scenario of how oil released at the location of the Deepwater Horizon disaster in the Gulf of Mexico may move in the upper 65 feet of the ocean. This is not a forecast, but rather, it illustrates a likely dispersal pathway of the oil for roughly four months following the spill. It assumes oil spilling continuously from April 20 to June 20. The colors represent a dilution factor ranging from red (most concentrated) to beige (most diluted). The dilution factor does not attempt to estimate the actual barrels of oil at any spot; rather, it depicts how much of the total oil from the source will be carried elsewhere by ocean currents. For example, areas showing a dilution factor of 0.01 would have one-hundredth the concentration of oil present at the spill site.
The animation is based on a computer model simulation, using a virtual dye, that assumes weather and current conditions similar to

April 28, 2010

Image of the Week - Earthquake comics

Image courtesy PHIVOLCS

In the EUAsiaGrid Disaster Mitigation Workshop at ISGC 2010, Bart Bautista of the Philippine Institute of Volcanology and Seismology (PHIVOLCS) reminded delegates that it is not enough to simply detect earthquakes and the tsunamis they produce with sophisticated sensors, or simulate them with grid computing. Countries in earthquake-prone regions must also invest heavily in preparing the population to cope with major natural disasters. This starts in schools, where outreach material like the comic book shown above is used to raise awareness among children.
— Francois Grey, EUAsia Grid

March 24, 2010

Feature - Ecological forecasting in NEON

TOP: NEON's proto-tower just north of Boulder, Colorado, where the project is testing equipment. The site is already producing a real-data stream.
BOTTOM: Hongyan Luo conducts tests at the base of NEON's test proto-tower.
Images courtesy of NEON, Inc.

Massive independent networks of environmental and ecological data stations distributed across the globe could launch environmental science into the petascale era, transforming the way scientists look at our planet.
In the United States, the National Ecological Observatory Network is poised to begin construction later this year.
“What NEON is about is measuring the effects of climate change, land use change, and invasive species on continental scale ecology. And we’re doing that in order to enable ecological forecasting,” said Michael Keller, the chief of science at NEON.
Ecological forecasting, like weather forecasting, uses extensive data sets over large areas and pe

January 13, 2010

Feature - Keeping an eye on the skies with LifeWatch, poster winner of EGEE 09

Bird encounters jets. According to the photographer, “This was not done in Photoshop. The bird was certainly a lot closer than the planes, but the depth of field was deep enough to capture everything in focus.” Image courtesy Flickr/Kent Smith

Reports of ‘bird strikes’ in recent years are on the rise. According to Scientific American, in 1990 there were only 1,750 incidents in which birds struck a plane, whereas the number for 2008 was close to 8,000. While these encounters never work out well for the bird, normally the plane and passengers escape unharmed — although sometimes a lot of luck is involved. A small percentage of the time, the plane becomes seriously damaged and its engines fail, forcing an emergency landing (as happened last January with US Airways Flight 1549).
Several factors are contributing to the rise in bird strikes. For one thing, migratory bird popu

January 6, 2010
Link of the week - Climate Wizard

Link of the week - Climate Wizard

A screenshot of the Climate Wizard website.

Now anyone can play with climate models using an online tool called Climate Wizard.
Climate Wizard is an interactive website where visitors can browse maps of historical climate data and future predictions of temperature and precipitation.
“Climate Wizard does not simulate future climate. Rather, it analyzes General Circulation Models in a way that makes them more accessible to non-climate scientists,” said Evan Girvetz, a Senior Scientist with The Nature Conservancy Global Climate Change Program.
General Circulation Models are a type of mathematical model of the general circulation of a planetary atmosphere or ocean.
“The Climate Wizard takes climate projections from 16 GCMs, each of which are 3-dimensional databases of latitude, longitude, and time,” Girvetz said. “It analyzes each of them to determine the rate of change over time for each grid cell, then combines the maps of

November 11, 2009

Feature - Envirogrids: Protecting the Black Sea

Kız Kulesi (Leander’s Tower) in Istanbul’s harbor, whose waters feed into the Black Sea via the Bosphorus Straits. The EnviroGRIDS project will aid in protecting an area of great natural and cultural beauty. Image courtesy özhan 

The Argonauts sailed on its waters. Its eastern shores (now Georgia) marked the boundary of the known world to the Ancient Greeks. The lands along its northern shores are possibly the cradle of the Indo-European language family. The Black Sea region is rich in culture, history, natural beauty and — for the past 50 years — environmental problems.The land area containing the tributaries that feed into the Black Sea is five times the size of the sea itself (2 million square km). This “catchment basin” stretchs from near Munich in the west, the headwaters of the Danube near Moscow in the north, close to the border of Kazakhstan in the east, from the source o

November 4, 2009

Feature - FOOTWAYS takes its first steps

Footways started quite literally in the back of someone’s garage. Image courtesy Igor Dubus

Google, Hewlett Packard and Apple all had humble beginnings in the back of someone’s garage. Could the same be true in the back of a garage in Orleans, France?
“I had never seen a router/switch in my life, I had to get into VPN, network, perl scripting. I also had problems with electricity supply and consumption — this was my home, not a dedicated IT room,” says Igor Dubus.
This was only the beginning. Having built a 96-node cluster in his garage to run computer models as the coordinator of the FOOTPRINT project (iSGTW ran an article about FOOTPRINT earlier this year,) Dubus launched his own start-up company, called FOOTWAYS. His goal is to develop this “garage-cluster” into a 12,000-node high performance computing center dedicated to pesticide modeling.
FOOTPRINT, an EU project, seeks to minimize water contam

September 23, 2009

Nanoporous materials for green technology

Pictured here, a metal-organic framework with pores of approximately 1.4 nanometer in diameter.  Image courtesy of David Dubbeldam.

A new class of materials with nano-scale pores could help to improve hydrogen fuel cells or reduce auto emissions.
Using a variety of TeraGrid resources, researchers at Northwestern University and Kansas State University were able to model and evaluate metal-organic frameworks to see how these materials will perform under specific circumstances. They found that metal-organic frameworks act much like sponges, soaking up hydrogen gas and storing it in their nano-sized pores. In fact, these metal-organic frameworks are capable of soaking up far more hydrogen gas than could normally occupy the same amount of space.
To learn more about this research and its further applications, visit the research group’s website.

August 26, 2009

Image of the Week - Watch a tornado

Large-Eddy simulation of a tornado's interaction with the surface. Image courtesy Pittsburgh Supercomputing Center

Just what does the interior of a tornado look like as it swirls over the land?
To find out, researchers W.S. Lewellen, D.C. Lewellen and Aytekin Gel of West Virginia University made high resolution, fully 3-D simulations in an attempt to answer questions about the character of the turbulent eddies in this unique flow.
The following animated clip, made by Gel in close cooperation with the Pittsburgh Supercomputing Center’s (PSC) Scientific-Visualization Group, uses particle advection to represent wind direction and isosurfaces to show pressure inside a 400 m x 400 m x 400 m domain from a simulation involving approximately 100 hours of a Cray C90 supercomputer at PSC.
As a resource provider in TeraGrid, a National Science Foundation program of coordinated cyberinfrastructure for education and research, PSC works with its T

August 5, 2009
Feature - How green is my grid?

Feature - How green is my grid?

Image courtesy European Communities, 2009

(Editor’s note: the following is a condensed version of a GridBriefing on Green IT, that was just published on 31 July.)
Climate change is one of the biggest challenges of the 21st century. Across Europe, efforts are being made to reduce energy usage and carbon emissions by 20% by the year 2020. The European Commission has identified Information and Communication technologies (ICTs) as key to accomplishing this. It hopes to cut our carbon footprint all across the economy by harnessing technologies such as virtualization, and by investing in ICT research — which together promise to reduce energy consumption and increase our knowledge of the changing climate.
How green is our ICT? ICT is responsible for 2% of European carbon emissions — a figure equalling that of  the aviation industry — and emissions are expected to increase by 6% per year.However, the biggest savings a

July 1, 2009

Feature - Grid makes a SPLASH in underwater archaeology

Up to 3.2 million square kilometers of the European continental shelf (about 40 per cent of Europe’s land mass) was exposed as dry land during the periods of lower sea level that persisted throughout the Ice Ages. These now-submerged coastal regions probably played a key role in the survival and dispersal of Europe’s earliest Stone Age inhabitants, the extinction of the last Neanderthals, their replacement by modern humans originating from Africa, and the initial dispersal of agriculture from the Near East. (Insets show local river patterns on the shelf.) Image courtesy Nic Flemming/SPLASH

Submerged beneath the waves lies a large part of human history. For our ancestors, the ancient coastlines were attractive places to settle and experiment with what became the foundations of civilization. As the major glaciers melted between sixteen and six thousand years ago, these sites — where people first began to make fishin

June 24, 2009
Feature - Plenty more fish in the sea?

Feature - Plenty more fish in the sea?

According to the UN’s Food and Agriculture Organization, over 70% of the world’s fish stocks are fully exploited, overexploited or depleted. Image courtesy nahpets/stock.exchng 

Once thought to be an endless source of bounty, the oceans’ supply of fish has plummeted dramatically. The biggest cause of this deterioration — bigger than pollution — is overfishing.
Rampant over-fishing around the globe has caused some of our favorite species to hover near collapse. There has been a 90 percent drop in the number of tuna, salmon, cod, swordfish, rays, pollack and haddock since the 1950s, wrote Jeremy Jackson, director of the Scripps Center for Marine Biodiversity and Conservation at the University of California, San Diego, in a paper published last year in the Proceedings of the National Academy of Sciences.
The effects of over-fishing are being exacerbated by global climate change, which changes the distribution of sp

June 24, 2009
Image - Where to find the world's biggest sharks

Image of the week - Where to find the world’s biggest sharks

Image courtesy AquaMaps 

Thanks to the grid-based application AquaMaps (see this week’s “Plenty more fish in the sea?”), researchers find it much easier to display in graphic form where various marine species are located. For example, the map above shows the most likely places to locate the species known as “whale sharks” (Rhincodon typus), the world’s largest sharks. Red shows the greatest abundance, yellow the least abundance, and blue shows none.
This reporter can vouch for the whale sharks’ relative abundance off the Australian coast, having seen two while diving with marine biologist and shark expert Dennyse Newbound of the Department of Zoology of the University of Western Australia at Perth while researching an article for a wildlife publication.  Appropriately enough, the creatures were seen near Shark Bay, Western Australia. (Fortunately, the animals are h

June 10, 2009
Image - The Antarctic as seen from space

 

Image of the week - The Antarctic as seen from space

Image courtesy 

In this image, the Wilkins Ice Shelf can be seen in the process of slowly breaking away from the Antarctic Peninsula as the ice bridge that connects it to nearby islands looks set to collapse. New rifts forming along its center axis resulted in a large block of ice breaking away.The 40-kilometer-long (25-mile-long) ribbon of sea ice that secured the Jamaica-size ice shelf to Antarctica had been "hanging by a thread" since August 2008.
But now, at least, scientists can keep an eye on the phenomenon nearly in real-time, using images downloaded from the European Space Agency’s Webcam from Space, which have been processed by the Earth Observation Grid Processing On Demand operated at ESA/ESRIN using grid computing.
This is one several third-party applications and services integrated and supported by the European Space Agency Grid using Terradue's gridify application integration environment. The gri

May 6, 2009
iSGTW Feature - Open Parks Grid

Feature - Open Parks Grid: Managing natural and historic sites

 Image courtesy of OPG.

Widely considered integral to a healthy environment and society, parks and protected areas require care and maintenance by experts in diverse fields.  In a digital society, a digital link may help perpetuate parks’ unique resources and public interest in them. The Open Parks Grid (OPG) initiative aims to build this link.Brett Wright, chairman of Clemson University’s parks, recreation and tourism management department, initiated the effort in 2007 to integrate the U.S. National Parks and the people who use, manage and study them.  The institute proposes the Open Parks Grid will serve as a communication tool, and a virtual gateway to parks around the world. “Along with the diverse group of professionals you find in park management, come communications challenges,” said Wright. Remote locations, limited funding, and isolated management practices contribute to the ch

April 29, 2009

Opinion - Engaging UK researchers

Some of the things that ENGAGE has been involved in include software for the Aladin2 project, which allows for a simple, fast-running model of the Earth’s climate system. Image courtesy National Snow and Ice Data Center/World Data Center for Glaciology, Boulder, Colorado

It is risky to second-guess your users. There can be a difference between what we think our users need, and what they actually need. This is especially the case when trying to create technological platforms that enhance researchers’ ability to generate, collect, share, analyze, store and retrieve information; this is a young technology with a multi-disciplinary research base that can change focus with lightning speed. To counter this problem, the UK’s universities of Southampton, Edinburgh and Manchester (represented by OMII-UK, of which I am a part) and the National Grid Service  began the ENGAGE project. The goal was to create a picture of the computational need

April 29, 2009

Feature - Foreseeing floods

A typical forecast for France. Green represents good weather, yellow is possible rain, darker yellow (at bottom center) is Level 3 Hazardous Weather Alert. Image above  courtesy Meteo France. Image on previous page courtesy Gavin Spence, sxc.hu

During the last decade, flash floods have become one of the most significant natural hazards in Europe.
In September 2002, the Cévennes mountain range in south central France experienced a storm that lasted for 15 hours and caused 600 mm (almost 2 feet) of rain within one day — the normal equivalent of one year’s rain in the Paris area. Unexpected flash floods caused the deaths of more than 20 people, and economic damage estimated at 1.2 billion euros (about $1,555,261,897 in US dollars as of press time).
The ability to predict such situations is vital.
“There were not forecasting systems set up at that point (of the 2002 flood),” says Vincent Thierion, a geo-informatics researcher

February 25, 2009
iSGTW Feature - A FOOTPRINT keeps pesticides out of the water

Feature - A FOOTPRINT keeps pesticides out of the water A Calvados producer may use as many as 100 different varieties of apple to produce their brandy. The apples used can be sweet (such as the Rouge Duret variety), tart (such as Rambault), or bitter (such as the Frequin, Saint Martin and Mettais varieties).  Image courtesy Sandor Fizli Apple farmers in France's Vallée d'Auge — a part of Normandy renowned for its apple-based Calvados brandy — apply the insecticide Phosmet to their orchards to keep apple worm caterpillars from ruining their crops. But they don't want to pollute local water sources in the process. Knowing how much to add is tricky. Too little, and the compound will stay localized and break down before it travels far enough to do much good. Too much, and the pesticide may contaminate surface water and groundwater. The EU estimates that already 40% of Europe's surface water has been affected by such runoff problems, as have the fresh-water plankton, amphibians, fish and other

February 4, 2009

Feature - Anticipating "The big one" Click here or on image  to view the animation.The detailed, perspective views show the ground shaking from a viewpoint two miles (three kilometers) above the earth looking towards each location. The left panel shows a map view of the area with the fault rupture highlighted in red, the epicenter (location where the rupture starts) identified by the red ball, and the location shown in the right panel labeled in yellow. In the right panel the deformation of the ground associated with the propagation of the seismic waves is exaggerated by a factor of 1000. Simulations developed by the Southern California Earthquake Center ShakeOut Simulation workgroup. Animations courtesy of the U.S Geological Survey and the Southern California Earthquake Center. At 10 a.m. on November 13, 5.3 million people in Southern California participated in the largest earthquake preparedness activity in U.S. history. The Great Southern California ShakeOut — an earthquake drill that was a collaborati

January 21, 2009

Opinion - Perspectives on advancements in distributed computing At an informal SC08 discussion titled "Traditional & Distributed HPC–What has changed? What remains the same?" participants — both users and developers — shared experiences and insights on the advancement of grid-based High Performance Computing. Led by Gabrielle Allen and Daniel S. Katz of the LSU Center for Computation & Technology, and Gary Crane, SURA Director of IT Initiatives (including SURAgrid), the group identified several areas in which it believes grid technology needs to advance in order to deliver cost-effective service. Management of distributed dataMany research domains require data from diverse sources, and output from one application is frequently used as input to another. Data definitions that cross application boundaries are rare, making sharing between applications difficult or impossible. Participants noted the progress in relevant standards development by the Common Component Architecture group. They also c

November 19, 2008

Feature - Zero-carbon data centers for green computing “There are a number of companies (and universities) deploying zero carbon data centers in Canada and USA,” says St. Arnaud. “These data centers are solely powered by renewable resources.”   Canadian sites—powered by water and wind—are shown here along with leased wavelength connections (red) and networks (blue and grey).Image courtesy of CANARIE. Information and communication technology (ICT), the fifth largest consumer of power in the world, currently contributes 3-4% of the world’s CO2 emissions—and is doubling every three to four years. To reduce its carbon footprint, the ICT industry has started relocating computing facilities to zero-carbon data centers at renewable energy sites.Most of the energy used for ICT is supplied by coal, which is very dirty, explains Bill St. Arnaud of the Canadian Advanced Network and Research for Industry and Education (CANARIE). In a year, one medium sized server generates as much CO2

November 5, 2008

Video of the week - Polar Grid The ice shelves in West Antarctica are disintegrating, and glaciers in southern Greenland are moving faster. These great ice sheets affect the global climate in complex ways. The impact of their retreat on sea levels would be profound.In September 2007, iSGTW reported on Polar Grid (PolarGrid: entering the ice age), a “project to advance cyberinfrastructure, empower minority and smaller universities, and provide scientists with a gateway to teraflops of power: enough to drive new and improved high-performance simulations and enable measurement and prediction of ice sheet response to climate change and effect on ocean levels.”Watch the video for an update on PolarGrid!See more at the Polar Grid Web site.

October 15, 2008

Feature - Volunteer computing helps track malaria Thousands of volunteers are contributing to the project from all over the globe. Image courtesy of Nicolas Maire How do you predict the results of a malaria vaccine? With the grid, and volunteer computing.A research team at the Swiss Tropical Institute, or STI, in Basel studied the use of computer simulations to predict the epidemiological impact of potential malaria vaccines.  These predictions were obtained with the help of thousands of volunteers who made their computers available to Malariacontol.net, a volunteer computing project based on the Berkeley Open Infrastructure for Network Computing (BOINC).Malaria is one of the world’s leading public health problems, estimated to cause over a million deaths per year. Mathematical modeling of malaria, such as that done on computer, can help public health experts predict the epidemiological impact and cost effectiveness of vaccines and other malaria control interventions.Because running such simulation models is computatio