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Content about EGEE

August 8, 2007

  Feature - Grids a great tool against gridlock Grid-powered traffic simulations of a variety of situations can be used to predict traffic flows and provide important information to motorists.Stock image from sxc.huHow can we design communication protocols that take advantage of emerging car-to-car wireless communication facilities to provide effective services to vehicles?This is a question that researchers from the University of Cyprus, Rutgers University, and Siemens Corporate Research ask themselves when investigating the potential of inter-vehicle communication—a promising field of research with tremendous potential to assist drivers by providing time-critical information about road-traffic conditions, road-side services and safety-related conditions. One way to answer this question is by introducing an application-layer communication protocol, designed to support traffic-oriented services over ad-hoc vehicular networks.  Enter the Vehicular Information Transfer ProtocolAndreas Florides, from the High-Performa

August 8, 2007

Link of the week - DIY grid summer school Happy graduates from the Joint EGEE and SEE-GRID Summer School on Application Support, the teaching material from which is now available.Image courtesy of Gergely SiposMissed out on attending a grid summer school this year? Why not study at home using the teaching material from the Joint EGEE and SEE-GRID Summer School on Application Support, held 25-30 June in Budapest, Hungary, and organized and hosted by MTA SZTAKI, the Computer and Automation Research Institute of the Hungarian Academy of Sciences.The teaching material includes lectures, slides and notes for the hands-on practicals, originally presented by EGEE, SEE-GRID and ICEAGE representatives. The school aimed to introduce potential users to EGEE and SEE-GRID grid technologies, and to introduce methods for application development on EGEE grid networks. Its primary focus was on ways that end-users can apply gLite middleware to operate large-scale distributed applications on top of inter-organizational grids. Twenty-two people att

August 1, 2007

  Technology - GridWay: interoperability without the headache The GridWay metascheduler can schedule jobs across several grids, including Open Science Grid, EGEE and TeraGrid.Image courtesy of GridWay What looks and feels like your Local Resource Management system, but lets you submit jobs to multiple heterogeneous grids? Sounds like the beginning of a bad joke or pipe dream? You might need to upgrade your metascheduler.So says Tino Vazquez Blanco, a grid technology engineer working on the GridWay metascheduler project.“GridWay allows you to do much more than your local LRM system. You can of course use GridWay to submit, monitor, and control your jobs; the added bonus is that you can do this across several different grids.”GridWay is a scheduler for other schedulers, Blanco explains. “It simulates a familiar environment, so it’s as if you’re working on a local cluster, but in fact you’re working across grids formed by heterogeneous clusters. You don’t need to worry about where the cl

July 11, 2007

Announcement - EGEE ’07 early bird registration extended The perfect place for a grid conference, Budapest itself is divided into a grid, with each of its 23 districts referred to by a roman numeral.Image courtesy of budapest.com EGEE’07 earlybird registration has been extended to July 13 2007. Enabling Grids for E-Science has opened its books to take early bird registrations for EGEE ’07, one of the major international grid events of the year.Register now to be part of what organizers are predicting will be the largest EGEE conference yet. Held in Budapest from 1-5 October 2007, EGEE ’07 is expected to attract more than 600 key players from the international grid community, including users, decision makers, resource providers, developers, governments and businesses. The main theme of the conference this year is communication and building bridges between science and business, users and infrastructures, countries, scientific disciplines and projects.

July 11, 2007

  Feature - More than just computing power: earth science on EGEE Monique Petitdidier: grid technology has more to offer than computing power.Image courtesy of EGEE You have a good chance of meeting Monique Petitdidier at any event that combines earth science with computing. Although officially retired, Petitdidier continues in her role as a senior scientist with French institutes IPSL and CNRS: she coordinates the Earth Science contingent of the Enabling Grids for E-sciencE community, and is a driving force behind the DEGREE project (Dissemination and Exploitation of GRids in Earth Science)Petitdidier says scientists in the Earth Science Research Virtual Organisation view grids as simply a computing means to their research end.“Most institutes cannot afford intensive computation, such as that required to run millions of jobs or very large data archive exploration,” Petitdidier points out. “This means that their science is limited by the computing power they have available.”“We mainly have rese

July 11, 2007

  Opinion - Grid: goldmine for entrepreneurs? The ability to search through millions of images to locate specific content. Now what would that be worth? And where else to get the computing power for such technology but the grid?Image courtesy of Imense Who still includes access to electricity as a competitive advantage in their business? I don't.In his article ‘IT Doesn’t Matter’, published in the May 2003 edition of the Harvard Business Review, Nicholas Carr points out that such days are long gone, and he suggests IT is heading the same way. As the availability of IT increases, and its cost decreases, it will becomes less a strategic advantage, and more an everyday commodity that anyone can buy. The rapid development of virtualisation and distributed computing technologies, including grids, means that the paradigm shift predicted by Nicholas Carr could happen sooner rather than later.But what does this mean for scientists keen to become entrepreneurs? For big businesses, the grid value proposition is rat

July 4, 2007

  Feature - Summer of learning: what’s with all these grid schools? Grid summer schools are a catalyst for the creation of long-lasting international and inter-disciplinary networks. This image was taken at the Biomed GRID School, held 14-19 May 2007, in Varenna, Italy.Image courtesy of David FergussonIt’s that time of year again: the snow melts, the skies turn blue, and grid summer schools appear across the planet. David Fergusson is something of an old hand when it comes to grid education: he has organised and attended numerous training events, workshops and summer schools; managed the NA3 Training Activity as part of EGEE; and is currently the deputy director for Training Outreach and Education at the National e-Science Centre, Edinburgh, UK, as well as the Manager of ICEAGE, a project dedicated to advanced grid education events. Fergusson found time between summer schools to chat with EGEE’s Alison McCall.Alison McCall: Why hold grid summer schools?David Fergusson: Grid summer schools bring together expe

June 13, 2007

Image of the week - Tissue analysis with grids An example of test analysis: left, the input image, a tissue slice from a donor; right, the slice digitized.Image courtesy of Federica Viti, Università degli Studi di GenovaIn the ongoing battle against disease, some researchers are taking standard tissue analysis a step further: a technique known as tissue microarray analysis, or TMA, helps researchers search tiny pieces of tissue for traces of disease. Digitizing these images allows them to be analyzed and shared with the help of computers. Using digitized TMA, researchers can access and analyze many tissues at once, saving time and expense. Although sharing images between institutions certainly increases a researcher’s resources, it can also add to their data burden, and it can also raise concerns about patient privacy.  A team from the Institute for Biomedical Technologies, National Research Council in Milan, Italy, and the Institute for Applied Mathematics and Information Technology, National Research Council in

May 30, 2007

  Feature - EU-IndiaGrid: Building a Partnership Across Hemispheres Sleeping giant: India’s grid potential is huge but so far largely untapped.Image courtesy of morgueFile Over the last 10 years, India has posted an average annual growth rate of more than 7%. India’s success in the IT field  has been especially dazzling; it is already a major exporter of software services and software engineers.  Despite these advances, the nation still faces pressing problems and currently lacks the computing infrastructure required to fully use modern technology and its educated population. EU-IndiaGrid, the first project of its kind, seeks to join grids in Europe and India and promote research in both regions.  “Our main goal is to establish a collaboration between India and Europe and to support the evolution of Indian grid interests,” says the project’s manager, Alberto Masoni.The key elements of this support are infrastructure and interoperability: two golden words of the grid world. EU-IndiaG

May 30, 2007

  Feature - Grid Power in Five Minutes? Harald Kornmayer talks with Cristy Burne at this month's OGF20/EGEE User Forum in Manchester, UK.Image courtesy of Owen Appleton Start the clock. It is 16.23. Harald Kornmayer, spokesperson for the g-Eclipse project, has already drawn a crowd. His promise? Access to the computing power of the Grid in just five minutes.For those juggling the complexity of multiple stand-alone grid-based applications, Kornmayer offers something simple: g-Eclipse—a generic framework that allows users to incorporate many different tools via a standardized, customizable, intuitive interface. “We’re aiming to develop a general middleware-independent framework that can be easily used by all grid users, operators and application developers,” explains Kornmayer. “We’re also providing support for new applications, so new projects can speed up tool development and integration, reducing time-to-market and time-to-service.”The g-Eclipse project is funded by the European C

May 23, 2007

  Feature - From High Performance Computing to Grid Marie-Christine Sawley, co-director of the Swiss National Supercomputing Center. Image courtesy of M. F. Arnold Computing power continues to grow exponentially. Users are demanding ever-more computing power as their applications become increasingly complex.Marie-Christine Sawley, co-director of the Swiss National Supercomputing Center (CSCS), has the job of matching the rapid expansion of computing technology with the needs of CSCS Users.“Communities with many different portfolios are using the CSCS: from biology and environmental science, fluid dynamics and material science to physics and astronomy,” Sawley explains. “Our facilities are used by the whole scientific community in Switzerland. Proposals to use our computers are scientifically reviewed and then they get their resources for free.” Supporting universities and research institutions in Switzerland is only one of CSCS’ areas of activity. Other units are dedicated to system

May 23, 2007

Statistic of the Week - 318 Stock image from sxc.huFor those new to grid computing, or those who wonder what happened to all the real words, the Enabling Grids for E-sciencE glossary can provide a ready guide to the acronyms and keywords that pop up in almost every grid-related sentence. The glossary defines 318 acronyms. The EGEE project, now in its fourth year, was reviewed by an independent panel nominated by the European Commission at CERN in Switzerland last week. Presumably the reviewers didn’t have too much of a problem sorting their GUIs from their GILDAs: their preliminary comments were very positive. “Anyone involved in EGEE had very high expectations, and we haven’t been disappointed,” said one of the reviewers. “Overall we assessed the project as performing excellently.”Can’t find your personal favorite in the EGEE Glossary? Send an e-mail to [email protected] and do your bit to help demystify grids.. 

May 16, 2007

  Feature - Health-e-Child Prepares for DeploymentMembers of the Health-e-Child team preparing hardware for deployment in hospitals.Image courtesy of David Manset Between now and the end of the May, members of the Health-e-Child collaboration will crouch over their newly arrived servers, installing and testing software, as part of a project they hope will revolutionize pediatrics in Europe. When the servers are installed and turned on at hospitals in London, Paris and Genoa they will be crucial nodes of the Health-e-Child infrastructure. “The knowledge produced in hospitals is important to share,” says Konstantin Skaburskas, lead technical specialist for Health-e-Child. “We are creating a repository which will allow pediatricians to share their knowledge online.” Health-e-Child, like its predecessor Mammogrid, is a distributed computing project that connects hospitals and participating institutions—allowing them to share integrated, multi-level information. Genetic, cellular, tissue- and organ

May 16, 2007

  Feature - OGF20 and EGEE 2nd User Forum: Thoughts From a Grid NoviceCristy Burne at OGF20/EGEE User Forum in Manchester, UK.Image courtesy of Sabah SalinA few months ago I thought the grid was something you used to solve a sudoku. Ideally, the majority of grid users need never know any different; the word “grid” will be buried into the services it represents.Currently this is far from the case. The Grid is a work in progress. Its users are its guinea pigs, hopefully its allies, and certainly those who should have most influence on its development. Many thousands of these users are already dependent on grid technology for the everyday running of their projects. We have seen vast improvements in the quality of grid services in the last few years, but there is a long way to go before using the grid becomes as simple as just plugging in.Events such as last week’s joint 20th Open Grid Forum and Enabling Grids for E-sciencE User Forum, held in Manchester, England, are a chance for users to share their grid experie

May 9, 2007

Announcement - Apply now for the Joint EGEE and SEE-GRID Summer School on Grid Application SupportThe 2007 EGEE and SEE-GRID summer school will be held in Budapest, Hungary.Stock image from sxc.huThe joint EGEE and SEE-GRID Summer School on Grid Application Support is accepting applications. The summer school, to be held June 25-30 in Budapest, Hungary, is open for anyone interested in the use of EGEE and SEE-GRID tools, technologies and infrastructures. The school’s goal is to enable end-users to apply the EGEE middleware to operate applications on top of inter-organizational IT infrastructures. The school gives an opportunity to learn the usage of grid systems without low-level technical details. During dedicated sessions the attendees’ own applications can be ported onto EGEE and SEE-GRID. The summer school will be conducted in English—no simultaneous translation will be available.The registration deadline is June 10. To learn more and register online visit the school’s Web site.

May 9, 2007

Feature - LCG-France: Ramping-up for the LHCA recent meeting of LCG-France. Image courtesy of LCG-FranceIn March 2007, more than seventy members of LCG-France gathered together in order to discuss the progress of French involvement in the global grid infrastructure to meet the computing needs of the Large Hadron Collider, CERN’s new particle accelerator, set to go online late this year. This meeting highlighted the challenging aspects of the Worldwide LHC Computing Grid and the progress made during the last several months. Many new members have recently joined LCG-France as part of the preparation for the LHC start up. “The required data processing capacity, complexity of the installation and management of the computing—as well as the effort needed to provide and operate a reliable platform for the experiments—have led to an important increase in the staff and in the number of French sites,” says Fairouz Malek, scientific manager for LCG-France.To cope with the large amount of data the LHC will pro

May 9, 2007

Link of the Week - Gridcast.org Go to Gridcast.org this week to hear the latest from the OGF20/EGEE User forum. Gridcasts share the excitement of the emerging developments in the grid field with the public. This week Gridcast.org will be casting from the joint 20th Open Grid Forum and the Enabling Grids for E-sciencE User forum in Manchester, England. Gridcasts are a combination of blogs, podcasts and videos. This week’s Gridcasts will from eight people with different backgrounds participating in the meetings. They will share ideas, experiences, feelings, impressions, anything helpful to make the public “feel like they were there.”Check it out at www.gridcast.org.

April 25, 2007

Feature - Cairo Hosts an International Grid SchoolThe Sphinx and one of the pyramids at the Giza plateau, Egypt.Stock image from sxc.huFrom April 17 to April 28, in the shadow of ancient technological marvels, scientists from all over the Mediterranean are working to advance modern computing technology and teach other researchers to do the same. A hotel in downtown Cairo, about five miles from the great pyramids at Giza, is the site of the first EUMEDGRID School on Application Porting (EGSAP-1). “This is the first time we have organized such a large event in this region,” says Federico Ruggieri, EUMEDGRID Project Manager. The 15-day school, which involves researchers from seven Mediterranean countries, aims to port 10 applications before the closing session next Saturday. At the time of publication, nine of the 10 applications had been successfully “ported” or incorporated into grid middleware. And one of the applications already has its Web interface.“This is excellent, much b

April 4, 2007

Feature - EGEE-II: a grid for research EGEE resources aid research in many scientific fields.Image courtesy of EGEEEnabling Grids for E-sciencE is a major European initiative to develop a grid for researchers. EGEE-II is the second phase of a four-year program, and includes 91 partners in 32 countries, with many other groups contributing to the project’s work. EGEE was originally developed to make grid resources available to European researchers, but is rapidly expanding to work with the global grid community. EGEE-II works closely with other grid initiatives such as DEISA, the European supercomputing grid, Japan’s NAREGI, and the Open Science Grid in the United States.“EGEE is an ambitious program,” said Bob Jones, the project’s director, “but with the dedication of our many project members, we’ve been able to achieve a great deal in the last few years. We are helping make fundamental changes to the way modern research is carried out.”In addition to working closely with grid initiati

March 21, 2007

Feature - Gridifying Geant4Simulation of the nuclear reaction of a cosmic-ray proton in one of the inertial sensors of the Laser Interferometer Space Antenna. LISA is a joint ESA-NASA mission for the first space-borne gravitational wave detector. Image courtesy of Geant4 Twice a year a new version of the Geant4 software is released to the research community. Geant4, a software toolkit that simulates the interactions of particles with scientific instruments, is used by high-energy physicists, space scientists, medical physicists and radiation researchers. These simulations can help engineers alter instrument design for optimal performance or teach researchers how to best analyze their data.Before a release, the new version of Geant4 must be carefully tested. Evaluators from the Geant4 development team compare the simulation results of two previous Geant4 versions, looking for significant differences. Since December 2004, these tests have been run at several Worldwide LHC Computing Grid sites using the EGEE infrastructure. Grid comput

March 21, 2007

Feature - Grids Aid Battle Against Cancer A digital image such as this one, showing lesions in a patient's liver, can now be distributed among participating hospitals through a grid. Image courtesy of Ignacio BlanquerSpanish medical staff in the region of Valencia have a new weapon in the arsenal against cancer. In January, a team of medical and computing researchers launched a grid-enabled infrastructure that shares oncological studies, digital images and reports among five hospitals in the Valencia region.“In the field of oncology, quantification is very important for diagnosis,” says Ignacio Blanquer, associate professor of computer science and researcher in the High Performance Computing and Networking Group, at Universidad Politécnica de Valencia in Spain. “The more information the radiologist has at hand, the more objective and accurate the diagnosis.” On March 22, the team Blanquer works with, led by Vicente Hernandez, will present the deployment of CVIMO, the Valencian Cyberi

March 21, 2007

Image of the Week - Modeling Underground Waterflow with CODESA-3DCODESA-3D visualization of underground waterflow in the Korba aquifer in Tunisia. Image courtesy of Giuditta Lecca, CRS4, Italy and Domenico Vicinanza, CERN-IT and University of Salerno, Italy CODESA-3D, or COupled DEnsity-dependent variably SAturated flow and miscible transport, is an EUMedGrid application that models water movement in aquifers. This three-dimensional simulator can help hydrologists calculate how much fresh water can be pumped from costal aquifers before risking salt water contamination. EUMedGrid aims to create a grid infrastructure for research in the Mediterranean region.

March 7, 2007

Feature - Grids go to Market Tycoon will allow users to pay for on-demand computing power like consumers pay for on-demand electricity. Tycoon is a software system designed to manage IT resources by putting compute cycles, data storage and bandwidth up for auction. Hewlett-Packard researcher and Tycoon developer Bernardo Huberman believes market-based systems are the way of the allocating future. “There was initially a lot of resistance to allocating resources in this way,” says Huberman. However, he explains, a market-based system is more efficient than traditional first-come-first-serve plans. It encourages people to be more truthful in their service requests, reduces idle CPU time and delivers resources in a speedy, agile manner. Through Hewlett-Packard’s involvement in the CERN openlab industrial partnership, Tycoon has recently been deployed on nodes at CERN and other sites within the EGEE grid infrastructure. The insights gained from these tests may help scientists allocate grid resources more efficiently. Hu

March 7, 2007

Feature - Parallel Evolution: DILIGENT and ETICS Parallel evolution: two EU funded projects interacting for mutual benefit. Left, the ETICS interface. Right, watermarking and video curation, two functions of the DILIGENT system. Image courtesy of Owen Appleton DILIGENT and ETICS, two European Commission-funded projects that are leaders in the European Grid scene, recently achieved milestone releases of their software, thanks largely to their collaboration with each other.ETICS—E-infrastructure for Testing Integration and Configuration of Software—offers grid-enabled, automated building and testing of software. Just over a year after the project launched, their final release candidate was made public. The project’s service, however, has been in use for some time by several projects, including DILIGENT—a DIgital Library Infrastructure on Grid Enabled Technologies. “We started to use ETICS when it was three months old for our build and deployment testing activities,” explained DILIGENT’s Ped

March 7, 2007

Statistic of the Week - 4.3 Million A simulation of the drug binding to a protein from the malaria parasite. Image Credit Vinod KASAM, CNRS/IN2P3Number of potential malarial medicines tested in two and a half months by the second phase of the WISDOM initiative. WISDOM analyzed possible docking arrangements between drug compounds and target proteins of the malaria parasite, with the hope of accelerating the search for anti-malarial drugs.  The WISDOM initiative, carried out as an international cooperative project, completed January 31. Several international calculation grids made WISDOM possible, including EGEE, AuverGrid, EELA, EUMedGrid, EUChinaGrid, TWGrid, BioinfoGrid and Embrace.To learn more click here.