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November 5, 2008

Video of the week - Polar Grid The ice shelves in West Antarctica are disintegrating, and glaciers in southern Greenland are moving faster. These great ice sheets affect the global climate in complex ways. The impact of their retreat on sea levels would be profound.In September 2007, iSGTW reported on Polar Grid (PolarGrid: entering the ice age), a “project to advance cyberinfrastructure, empower minority and smaller universities, and provide scientists with a gateway to teraflops of power: enough to drive new and improved high-performance simulations and enable measurement and prediction of ice sheet response to climate change and effect on ocean levels.”Watch the video for an update on PolarGrid!See more at the Polar Grid Web site.

October 29, 2008

  Image of the week - Medical Data Manager Doctors in Amsterdam may soon have more time in their busy schedules to spend with their patients.A new way to access and manage patient data—the EGEE-developed Medical Data Manager, or MDM—was installed in June at the Amsterdam Medical Center, Netherlands, in its first deployment for real use. They hope to finish testing by the end of this year, and use the tool in production in 2009. In development since 2003, the MDM allows secure access to images in the DICOM format from grid resources. Standing for Digital Image and COmmunication in Medicine, DICOM is the prevailing world standard for computerized tomography (CT) scans, magnetic resonance images (MRI), positron-emission tomography (PET), X-rays and ultrasound images. MDM has several layers of access to comply with strict privacy requirements.“This tool is expected to be a great boon for the doctors and researchers, ” said Johan Montagnat, computing researcher at CNRS. “They c

October 22, 2008

Image of the week - Molecular dynamics on DEISA: lipids, licorice and lines A single snapshot of a coarse-grained molecular dynamics simulation of a protein (Synaptobrevin transmembrane domain) in a lipid bilayer. The protein is shown as licorice, lipids as lines and water as points. The red arrows show the user external forces applied interactively in the simulation. Here, the membrane anchoring of protein is probed by pulling on one particular side (on tryptophane residues). Image courtesy of deisa.eu. From the DEISA Newsletter, Vol. 5, 2008 Coupled applicationsMany complex systems can be viewed as sets of components that obey their own physical laws and interact weakly with one another. Code-coupling, which deals with multi-physics, multi-models and multi-scale numerical simulations, is well-suited for inter-disciplinary research projects in which different legacy codes cooperate within the whole coupled application.Generally, due to the complexity of these applications, coupled codes run with a moderate efficiency on parallel

October 15, 2008

  Image of the week - CMS CMS In the world of physics, “compact” is a relative term. Here is a view of the “Compact” Muon Solenoid, or CMS, as shot by Peter McCready, who has been creating a series of panoramic views of all the large experiments. Last in the series, this shows CMS in a 360-degree, rotating view, with natural sound, when you click on the picture above. For each image, 102 separate, individual photos were shot,  then stitched together into one seamless 40MP spherical image, much like an old-fashioned cyclorama. Each image takes as much as four weeks to complete in the his digital darkroom. When coupled with ambient sound that he recorded at the site, the user gets what McCready calls a  “Virtual Reality” experience. Image courtesy of Peter McCready    

October 8, 2008

GridFest Video Image courtesy of GridFest. Friday, October 3rd was the official “GridFest Day.”For those of you who could not be there to see everything for yourselves, click on the image at right.Or, if you were there, but want to relive the moment—or hear and see from some of those who made it all happen—you should also click on the right-hand image.

October 1, 2008

Image of the week - Fostering conditions to leverage the rich and evolving CI that surround us  Image courtesy of Patricia Hilton and GSA OIS.This mural by Patricia Hilton represents what she heard at a preparatory discussion for the 16 September workshop Strategic Leadership For Networking and Information Technology Education , sponsored by the GSA Office of Intergovernmental Solutions.The office leads monthly Collaborative Expedition workshops to advance the quality of citizen-government dialogue and intergovernmental collaborations. This workshop aimed to create the basis for a broad and successful coordination effort to build leadership in Networking and Information Technology (NIT) education.  It addressed fundamental workforce and educational goals that must be met in order to preserve U.S. leadership in NIT and ensure growth and prosperity: ensure the current generation is prepared to employ NIT capabilities effectively empower the next generation to create new technologies and concepts promote the innovative use

September 24, 2008

Image of the week - EGEE 2008 this week in Istanbul iSGTW in Istanbul. Click image for a PDF file of the poster to download.Image courtesy of Andre-Pierre OlivierIt's tough to enjoy the ambiance of an Istanbul sunset via the Internet, but thanks to GridTalk’s GridCast you're not too far removed from what's happening at EGEE 08... Take some virtual tours:Neu Grid  Grid CSICEtics 2BalticGrid IIEELA 2Belief IITR-GridHealth-e-Child Read Catherine Gater’s reports on the opening plenaries and thinking about grids in Asia.    Gillian Sinclair of the U.K.’s NGS will be “podded”, as she calls it, on Wednesday. “Yes, I'm being filmed for a podcast and I’m slightly nervous as this is my first one! Must remember not to use any odd Scottish words... ”

September 17, 2008

Image of the week - Plus ça change... Then and now Top: Indication of first beam in the main accelerator ring at Fermilab (known then as National Accelerator Lab) in Batavia, Illinois, 30 June 1971.   The captions read:Left: Beam injected at A-11 (a location on the accelerator ring) from Booster Right:1st turn, 21 microseconds later after travelling around 4 miles (the full circumference)This ring was later upgraded with superconducting magnets to become the Tevatron. Image courtesy of Fermilab History and Archives project, Adrienne KolbBottom: Indication of first beam in the LHC at CERN, 10 September 2008.  Analogous to the upper image, the dot at lower left indicates successful injection, the dot at upper right indicates the beam completed its first full circuit of 27 km. Image courtesy of CERN and David Ritchie.Also see: CERN Control Centre video broadcast of first LHC beam  Evidence of first beam—1971 at Fermilab in Illinois, and 2008 at the Large Hadron Collider on the French-Swiss border—was

September 10, 2008

  Image of the week - ATLAS (Click on this link or the photo above to get the rotating, 360-degree, panoramic view, with natural sound.)ATLAS In a continuing series, Peter McCready has been creating panoramic views of all the large experiments of the LHC. ATLAS (A Toroidal LHC ApparatuS) was shot using a Nikon professional digital, single lens reflex camera, attached to a tripod that allows for a 360-degree, rotating view. For each image, 102 separate, individual photos were shot,  then stitched together into one seamless 40MP spherical image. Each image takes as much as four weeks to complete in the his digital darkroom. When coupled with ambient sound that he recorded at the site, the user gets what McCready calls a  “Virtual Reality” experience. Image courtesy of Peter McCready    

September 3, 2008

Image of the week - A quest for quiet speed Isosurface of density (3-D surface of constant density) colored by velocity magnitude. Image courtesy of DEISA. Picture yourself at the window of a hillside villa, a glass of Chianti in your hand, a Verdi aria spilling in from the next room. You're contemplating the cyprus trees and olive groves in the Tuscan sunset, relaxing after a hard day's work. Then...Vvrrrroooooomm!!Your glass—and your nerves— shatter, and it wasn't the soprano.Italy is known for the good life—and for fast cars. Fiat wants to make them compatible.To study automotive noise generation, the Fiat Research Center in Italy carried out a number of different computational fluid dynamics and aeroacoustic simulations using the DEISA research infrastructure.“Noise reduction is an important concern in terms of human well-being and health, and is a significant issue for a wide range of applications, including for the automotive industry”, says Roberto Tregnago, researcher at the cent

August 27, 2008

Image of the week - ChinaGrid opening ceremony 2008 Opening ceremony at ChinaGrid 2008.  Image courtesy of ChinaGrid The Beijing Olympics was not the only event in China this last month.Without a torch or thousands of perfectly synchronized dancers,  a less lavish Opening Ceremony welcomed participants to the 3rd ChinaGrid Annual Conference (ChinaGrid 2008). Held at Lanzhou University in Dunhuang, Gansu, China, the conference aimed to stimulate further exchange of experience and innovative ideas between experts and users involved in the ChinaGrid community.This publication hopes to share stories from this conference with you in the coming weeks.  

August 20, 2008

  Image of the week - One view of the LHC (Click on this link or the photo above to get the rotating, 360-degree, panoramic view, with natural sound.)One view of the Large Hadron Collider To give an idea of the enormity of the project at CERN, Peter McCready took a series of panoramic views of each of the  experiments. Last week, we showed ALICE, here's a view of one portion of the LHC. McCready creates these images using digital cameras mounted atop a customized tripod apparatus that allows him to take wrap-around images of up to a complete 360 rotation. Each image requires more than one hundred separate, individual photoraphs to be shot, which are then stitched together to form one seamless spherical image. The completed photo takes up 40MP. Image courtesy of Peter McCready    

August 13, 2008

  Image of the week - Go ask ALICE (Click on this link or the photo above to get the rotating, 360-degree, panoramic view, with natural sound.)GO ASK ALICE Peter McCready created panoramic views of ALICE (above), ATLAS, CMS and the LHC using Nikon professional digital, single lens reflex cameras attached to a custom rig that allows for views of up to 360 degrees atop a carbon-fiber tripod. For each image, exactly 102 separate, individual photos are shot at varying exposures (some a little under- and some a little over-exposed) to capture the full dynamic range of the lighting during the shoot. They were then stitched together into one seamless 40MP spherical image using a MacBook Pro and Photoshop over the course of as many as four weeks of post-production digital darkroom work. Sound was recorded using Marantz broadcast quality solid state recorders,  with ambient audio loop isolation and extraction using Peak Pro.When asked why he loves to do what he terms “Virtual Reality photographs&r

August 6, 2008

Link of the Week - LHC, the (underground) movie Image courtesy of Alpinekat, some dancers who prefer to remain anonymous, YouTube and US LHC Blog So, you think you have already heard of all the  ways in which the work of the Large Hadron Collider can be described?But have you seen the underground version?A music video was done on-site, in rap form, with portions filmed below ground in the tunnel near the supercooled magnets, making for a truly cool  movie. Posted to YouTube, it was put on the website of US LHC Blog—a neat site which has all kinds of unexpected stuff about particle physics, from A to Z. (Atlas to Z particle.)As for the rap, people posting to the US LHC Blog said it is not only “phat” (an acronym which The Online Slang Dictionary speculates could mean “pretty hot and tasty”) but has “mass.” See for yourself! —Dan Drollette, iSGTW

August 6, 2008

  Image of the week - Summertime on the Dubna On the river near Dubna, Russia, 228 people from 20 countries and 48 universities and scientific institutes presented 38 plenary reports for the GRID2008 international conference. And since it took place from 30 June to 4 July, these pictures provide a peek into what Russians do on the all-American holiday known as the Fourth of July. Images courtesy of Tatiana A. Strizh, Joint Institute for Nuclear Research, Dubna, Russia    

July 30, 2008

Image of the week - The Grid takes particle physics everywhere  Image courtesy of Fermilab. You never know where you'll find a passion for physics.So begins the text of this 2003 poster by graphic designer Kyle Romberg and Fermilab. It was part of a series produced to publicize the grid at the Lepton-Photon conference that year.  Five years ago the grid was considerably newer and this poster and its sisters attracted attention. In fact the Department of Energy and the National Science Foundation liked them so well, they used them later for grid-related events.“They made everyone smile,” says Judy Jackson, who was involved in their creation. “Physicists who had never heard of the grid before expressed interest. The posters helped us explain an unfamilar concept.” For those of you dying to know, here's the Poster text: Exploring the science of the universe engages the minds and imaginations of people everywhere. Yet historically, only a handful of high-tech laboratories and universi

July 23, 2008

Image of the week - For newbies: Applications as grid jobs Image courtesy of Morris Riedel. In his presentation to the International Summer School on Grid Computing 2008 in Hungary last week titled “e-Science with UNICORE,” Morris Riedel of the Juelich Supercomputing Center in Germany  focused on  how the UNICORE middleware is used with scientific applications. While doing so, he also illustrated more generally the relationships between science and e-science, and between e-science and grids.Riedel presented the concept that the natural sciences nowadays have three pillars: alongside theory and experiment stands computational techniques. Further, the infrastructures enabling e-science may be viewed as a fourth pillar. He quoted a definition by John Taylor which reads: “e-Science is about global collaboration in key areas of science and the next generation infrastructure that will enable it.” And what are these next generation infrastructures? Today grids provide the enabling infrastructure for da

July 16, 2008

Image of the week - Live from BudapestImage courtesy of the GridCast blogspot.Wanted to go to Budapest but just couldn’t make it?Want to know what’s happening behind the scenes at the International Summer School for Grid Computing?Well, if you could not attend in person, you can now attend virtually, via Gridcast, and hear what attendees have to say, straight from the source: the blog. (All gridcasts are produced by the GridTalk team.)The first person brave enough to stand in front of our cameras was Ben Sterrett.

July 2, 2008

  Image of the week - Modeling the salty seas With climate change, just how salty is the ocean getting? Fiona Reid and her team at the University of Edinburgh wanted to build the tools to find out. Working in conjunction with a combined French/European Nucleus for European Modeling of the Ocean, or NEMO, they have been working with "nested models" of computers, under a Distributed Computational Science and Engineering grant, with the aim of delivering state-of-the art ocean models needed for the next decade of marine science.  Image courtesy of EPCC    

July 2, 2008

Image of the week - Fun factoids “We report, you decide.”Image courtesy of YouTube“Developers of the grid say the net will be obsolete . . . ” “You'll be able to download a full-length feature film in seconds.” “The first test (of the grid) is this gigantic atom-smasher. Assuming it won’t blow up the world, which there is some talk it will do . . .”These were just some of the things said about the grid in a 2-minute story on a well-known cable news channel whose motto is “Fair and Balanced.”However, it is fun to watch what feels like a physics version of the spoof ‘news’ program The Daily Show.But we shouldn’t pick on any one media outlet. engadget summed up some of the more outrageous coverage with the headline “CERN creates a new super-fast internet, invites tons of people to a deathmatch.”In an effort to set the record straight—and give at least some credit wher

June 18, 2008

Image of the week - Matchmaking on the grid Jobs begin in the MATCHING site at the far left in the image (click for full image). The color-coded jobs are then sent to OSG compute sites, where they are stacked. Yellow chips on the stack are queued jobs and green ones are running. Completed jobs are sent to the DONE site at the far right. The color bar for ranking OSG sites is visible in the upper right of the image.  Image courtesy of David Borland, Mats Rynge, John McGee and Ray Idaszak, RENCI From the user’s perspective, the distributed grid computing framework known as the Open Science Grid is a seamless interface to computing system across the U.S. that allows jobs to be done more quickly and efficiently than any single computing system. Under the virtual “hood,” however, a lot happens to make the grid environment flow smoothly. This visualization created at the Renaissance Computing Institute (RENCI), an OSG partner, helps grid engineers and programmers understand how jobs of varying types and size

June 11, 2008

Image of the week - A slimmer Milky Way Our sun lies about 25,000 light years from the center of the Milky Way galaxy, roughly halfway out in the galactic disk. The new mass determination is based on the measured motions of 2,400 “blue horizontal branch” stars in the extended stellar halo that surrounds the disk. These measurements reach distances of nearly 200,000 light years from the galactic center, roughly the edge of the region illustrated above.The visible, stellar part of our Milky Way in the middle is embedded into its much more massive and more extended dark matter halo, indicated in dim red. The 'blue horizontal branch stars' that were found and measured in the SDSS-II study, are orbiting our Milky Way at large distances.From their speeds the researchers were able to estimate much better the mass of the Milky Way's dark matter halo, and found it to be much “slimmer” than thought before.Image courtesy of SDSS Collaboration, Axel Quetz, Max Planck Institute for Astrophysics, HeidelbergThe

June 4, 2008

  Link of the week – GridCast hooks bloggers at OGF23, 2-6 June, Barcelona Live from the forum, it’s the podcasters. Image courtesy of GridTalk Bloggers are providing a sneak-peek behind the scenes of the 23rd Open Grid Forum, held this week in Barcelona, Spain. They are part of a grid podcast, or GridCast, that allows readers to virtually share in the forum, as if they were really there on-site.Coordinated by the GridTalk project, the GridCast includes podcast interviews as well as a blog, and is being produced live from the forum, an event with more than 400 participants. “It provides a more personal outlook on all the valuable information, sessions and talks taking place at OGF23,” says Wolfgang Gentzsch, program chair. “We want to make readers feel as though they are here, as part of the event,” explains blogger Cristy Burne, coordinator for the GridTalk project. “It’s a ‘no-holds-barred’ look at what real people here are saying about gr

May 21, 2008

  Image of the week - Heavenly solutions Sergio Andreozzi is a researcher delving into the balance beween grid security and ease of accessibility, and he is working as part of the OMII-Europe team on standards. He is also a photographer, and when he saw this wall painting on the facade of a building in Portland, Oregon, he just could not resist the symbolism. For more on the topic of grid security, see this week’s feature on Securing the multi-platform grid. Image courtesy of Sergio Andreozzi, Istituto Nazionale di Fisica Nucleare (INFN), CNAF    

May 14, 2008

  Feature - Hello, Einstein residence … Why yes, he’s home! Albert Einstein (c) Camera Press, K. of Ottawa In 1916 Albert Einstein postulated that our universe is pulsing with gravitational waves created by the gyrations of black holes, neutron stars and other cosmic colossi. Nearly a century later, these waves’ existence has yet to be confirmed.The Laser Interferometer Gravitational-Wave Observatory, LIGO, will detect the ripples in space-time using controlled laser light to precisely measure the time it takes light to travel between suspended mirrors. In celebration of the World Year of Physics 2005 honoring this great scientist, and with the support of the American Physical Society and international organizations, LIGO launched Einstein@home, modeled after SETI@home, to attract CPU power to their data-intensive search. Volunteers all over the world have been downloading Einstein@home and collectively processing about one terabyte per day of LIGO’s data on their home computers. Th